| Parameters | Input values |
|---|---|
| Folder name : | Example data |
| Sequence name : | CDH1 |
| Group : | High methylated DNA |
| Experiment type : | Direct-BSP |
| Replicate number : | 1 |
| Date of sequencing #1 : | 2022-05-02 |
| Date of sequencing #2 : | 2022-05-02 |
| Date of analysis : | 2023-04-29 18:12 |
| Prefix of output files : | CDH1_High methylated DNA_1 |
| Reference DNA sequence information | Input values |
|---|---|
| Name | CDH1 |
| Strand used for primer design | Plus strand |
| Length | 341 pb |
| Coordinates on reference genome | chr16:68770940-68771280 |
## CCACCGGCGGGGCTGGGATTCGAACCCAGTGGAATCAGAACCGTGCAGGTCCCATAACCCACCTAGACCCTAGCAACTCCAGGCTAGAGGGTCACCGCGTCTATGCGAGGCCGGGTGGGCGGGCCGTCAGCTCCGCCCTGGGGAGGGGTCCGCGCTGCTGATTGGCTGTGGCCGGCAGGTGAACCCTCAGCCAATCAGCGGTACGGGGGGCGGTGCCTCCGGGGCTCACCTGGCTGCAGCCACGCACCCCCTCTCAGTGGCGTCGGAACTGCAAAGCACCTGTGAGCTTGCGGAAGTCAGTTCAGACTCCAGCCCGCTCCAGCCCGGCCCGACCCGACCGC
## GCGGTCGGGTCGGGCCGGGCTGGAGCGGGCTGGAGTCTGAACTGACTTCCGCAAGCTCACAGGTGCTTTGCAGTTCCGACGCCACTGAGAGGGGGTGCGTGGCTGCAGCCAGGTGAGCCCCGGAGGCACCGCCCCCCGTACCGCTGATTGGCTGAGGGTTCACCTGCCGGCCACAGCCAATCAGCAGCGCGGACCCCTCCCCAGGGCGGAGCTGACGGCCCGCCCACCCGGCCTCGCATAGACGCGGTGACCCTCTAGCCTGGAGTTGCTAGGGTCTAGGTGGGTTATGGGACCTGCACGGTTCTGATTCCACTGGGTTCGAATCCCAGCCCCGCCGGTGG
| CG number | chr | start | end | C position | G position |
|---|---|---|---|---|---|
| 1 | chr16 | 68770944 | 68770945 | 5 | 6 |
| 2 | chr16 | 68770947 | 68770948 | 8 | 9 |
| 3 | chr16 | 68770960 | 68770961 | 21 | 22 |
| 4 | chr16 | 68770981 | 68770982 | 42 | 43 |
| 5 | chr16 | 68771035 | 68771036 | 96 | 97 |
| 6 | chr16 | 68771037 | 68771038 | 98 | 99 |
| 7 | chr16 | 68771045 | 68771046 | 106 | 107 |
| 8 | chr16 | 68771051 | 68771052 | 112 | 113 |
| 9 | chr16 | 68771059 | 68771060 | 120 | 121 |
| 10 | chr16 | 68771064 | 68771065 | 125 | 126 |
| 11 | chr16 | 68771073 | 68771074 | 134 | 135 |
| 12 | chr16 | 68771090 | 68771091 | 151 | 152 |
| 13 | chr16 | 68771092 | 68771093 | 153 | 154 |
| 14 | chr16 | 68771112 | 68771113 | 173 | 174 |
| 15 | chr16 | 68771138 | 68771139 | 199 | 200 |
| 16 | chr16 | 68771143 | 68771144 | 204 | 205 |
| 17 | chr16 | 68771150 | 68771151 | 211 | 212 |
| 18 | chr16 | 68771159 | 68771160 | 220 | 221 |
| 19 | chr16 | 68771182 | 68771183 | 243 | 244 |
| 20 | chr16 | 68771200 | 68771201 | 261 | 262 |
| 21 | chr16 | 68771203 | 68771204 | 264 | 265 |
| 22 | chr16 | 68771230 | 68771231 | 291 | 292 |
| 23 | chr16 | 68771254 | 68771255 | 315 | 316 |
| 24 | chr16 | 68771264 | 68771265 | 325 | 326 |
| 25 | chr16 | 68771269 | 68771270 | 330 | 331 |
| 26 | chr16 | 68771274 | 68771275 | 335 | 336 |
| 27 | chr16 | 68771278 | 68771279 | 339 | 340 |
| CG number | chr | start | end | C position | G position |
|---|---|---|---|---|---|
| 27 | chr16 | 68771278 | 68771279 | 2 | 3 |
| 26 | chr16 | 68771274 | 68771275 | 6 | 7 |
| 25 | chr16 | 68771269 | 68771270 | 11 | 12 |
| 24 | chr16 | 68771264 | 68771265 | 16 | 17 |
| 23 | chr16 | 68771254 | 68771255 | 26 | 27 |
| 22 | chr16 | 68771230 | 68771231 | 50 | 51 |
| 21 | chr16 | 68771203 | 68771204 | 77 | 78 |
| 20 | chr16 | 68771200 | 68771201 | 80 | 81 |
| 19 | chr16 | 68771182 | 68771183 | 98 | 99 |
| 18 | chr16 | 68771159 | 68771160 | 121 | 122 |
| 17 | chr16 | 68771150 | 68771151 | 130 | 131 |
| 16 | chr16 | 68771143 | 68771144 | 137 | 138 |
| 15 | chr16 | 68771138 | 68771139 | 142 | 143 |
| 14 | chr16 | 68771112 | 68771113 | 168 | 169 |
| 13 | chr16 | 68771092 | 68771093 | 188 | 189 |
| 12 | chr16 | 68771090 | 68771091 | 190 | 191 |
| 11 | chr16 | 68771073 | 68771074 | 207 | 208 |
| 10 | chr16 | 68771064 | 68771065 | 216 | 217 |
| 9 | chr16 | 68771059 | 68771060 | 221 | 222 |
| 8 | chr16 | 68771051 | 68771052 | 229 | 230 |
| 7 | chr16 | 68771045 | 68771046 | 235 | 236 |
| 6 | chr16 | 68771037 | 68771038 | 243 | 244 |
| 5 | chr16 | 68771035 | 68771036 | 245 | 246 |
| 4 | chr16 | 68770981 | 68770982 | 299 | 300 |
| 3 | chr16 | 68770960 | 68770961 | 320 | 321 |
| 2 | chr16 | 68770947 | 68770948 | 333 | 334 |
| 1 | chr16 | 68770944 | 68770945 | 336 | 337 |
Bisulfite converted sequence of the plus strand as indicated as the template strand.
## TTATCGGCGGGGTTGGGATTCGAATTTAGTGGAATTAGAATCGTGTAGGTTTTATAATTTATTTAGATTTTAGTAATTTTAGGTTAGAGGGTTATCGCGTTTATGCGAGGTCGGGTGGGCGGGTCGTTAGTTTCGTTTTGGGGAGGGGTTCGCGTTGTTGATTGGTTGTGGTCGGTAGGTGAATTTTTAGTTAATTAGCGGTACGGGGGGCGGTGTTTTCGGGGTTTATTTGGTTGTAGTTACGTATTTTTTTTTAGTGGCGTCGGAATTGTAAAGTATTTGTGAGTTTGCGGAAGTTAGTTTAGATTTTAGTTCGTTTTAGTTCGGTTCGATTCGATCGT
Reverse complement of the bisulfite converted sequence from the plus strand.
## ACGATCGAATCGAACCGAACTAAAACGAACTAAAATCTAAACTAACTTCCGCAAACTCACAAATACTTTACAATTCCGACGCCACTAAAAAAAAATACGTAACTACAACCAAATAAACCCCGAAAACACCGCCCCCCGTACCGCTAATTAACTAAAAATTCACCTACCGACCACAACCAATCAACAACGCGAACCCCTCCCCAAAACGAAACTAACGACCCGCCCACCCGACCTCGCATAAACGCGATAACCCTCTAACCTAAAATTACTAAAATCTAAATAAATTATAAAACCTACACGATTCTAATTCCACTAAATTCGAATCCCAACCCCGCCGATAA
| Thresholds | Values |
|---|---|
| Minimum length of the trimmed sequence : | 30 bp |
| Minimum Phred quality score : | 30 |
| Minimum ratio of primary peak : | 0.75 |
| Minimum percentage of non-mixed positions : | 75 % |
| Sequencing | Length | Start position | End position | Mean of Phred quality scores | Mean of primary peak ratio | Percentage of non-mixed positions | Trimmed sequence quality |
|---|---|---|---|---|---|---|---|
| #1 | 81 | 48 | 128 | 38.58 | 0.82 | 72.84 | Incorrect |
| #2 | 213 | 10 | 222 | 46.38 | 0.95 | 93.90 | Correct |
Sequence of primary peaks:
Length: 354 bp
## TAATTTAGAGTTCGTAGTAGACGATATTGCGATATGCGAAGTCGGGTGGGCGGGTCGTTAGTTTCGTTATGGGGAGGGGTTCGCGTTGTTGATTGGTTGTGGTCGGTAGGTGAATTTTTAGTTAATTAGCGGTACGGGGGGCGGTGTTTTCGGGGTTTATTTGGTTGTAGTTACGTATTTTTTTTTAGTGGCGTCGGAATTGTAAAGTATTTGTGAGTTTCCTCGACTGTGCCTACTAATGAATGNCTGTCGGACGTAAATCACGCTCNCAANGANANANGAGAAANCTTCATTTACTAATGAATCCCCCTTCTAGATTNAANAGTGCGATANCCATCCCTANTACNATACCCC
Open chromatogram file in a new tab
| Position | A peak | T peak | G peak | C peak | Total | A ratio | T ratio | G ratio | C ratio | Primary base | Quality score | Primary ratio |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 17 | 36 | 6 | 0 | 59 | 0.29 | 0.61 | 0.10 | 0.00 | T | 2 | 0.61 |
| 2 | 75 | 53 | 16 | 18 | 162 | 0.46 | 0.33 | 0.10 | 0.11 | A | 3 | 0.46 |
| 3 | 61 | 47 | 0 | 26 | 134 | 0.46 | 0.35 | 0.00 | 0.19 | A | 6 | 0.46 |
| 4 | 1 | 60 | 0 | 27 | 88 | 0.01 | 0.68 | 0.00 | 0.31 | T | 5 | 0.68 |
| 5 | 0 | 73 | 0 | 26 | 99 | 0.00 | 0.74 | 0.00 | 0.26 | T | 5 | 0.74 |
| 6 | 39 | 60 | 0 | 26 | 125 | 0.31 | 0.48 | 0.00 | 0.21 | T | 4 | 0.48 |
| 7 | 63 | 36 | 0 | 25 | 124 | 0.51 | 0.29 | 0.00 | 0.20 | A | 5 | 0.51 |
| 8 | 45 | 0 | 321 | 20 | 386 | 0.12 | 0.00 | 0.83 | 0.05 | G | 11 | 0.83 |
| 9 | 18 | 0 | 0 | 17 | 35 | 0.51 | 0.00 | 0.00 | 0.49 | A | 4 | 0.51 |
| 10 | 13 | 0 | 204 | 14 | 231 | 0.06 | 0.00 | 0.88 | 0.06 | G | 13 | 0.88 |
| 11 | 6 | 54 | 0 | 14 | 74 | 0.08 | 0.73 | 0.00 | 0.19 | T | 5 | 0.73 |
| 12 | 13 | 32 | 1 | 20 | 66 | 0.20 | 0.48 | 0.02 | 0.30 | T | 5 | 0.48 |
| 13 | 0 | 0 | 0 | 33 | 33 | 0.00 | 0.00 | 0.00 | 1.00 | C | 5 | 1.00 |
| 14 | 0 | 0 | 1352 | 64 | 1416 | 0.00 | 0.00 | 0.95 | 0.05 | G | 5 | 0.95 |
| 15 | 6252 | 13676 | 0 | 5 | 19933 | 0.31 | 0.69 | 0.00 | 0.00 | T | 6 | 0.69 |
| 16 | 3453 | 0 | 3 | 0 | 3456 | 1.00 | 0.00 | 0.00 | 0.00 | A | 4 | 1.00 |
| 17 | 0 | 0 | 4062 | 12 | 4074 | 0.00 | 0.00 | 1.00 | 0.00 | G | 27 | 1.00 |
| 18 | 0 | 3644 | 0 | 36 | 3680 | 0.00 | 0.99 | 0.00 | 0.01 | T | 5 | 0.99 |
| 19 | 2419 | 0 | 0 | 0 | 2419 | 1.00 | 0.00 | 0.00 | 0.00 | A | 5 | 1.00 |
| 20 | 0 | 0 | 918 | 5 | 923 | 0.00 | 0.00 | 0.99 | 0.01 | G | 7 | 0.99 |
| 21 | 2700 | 55 | 0 | 0 | 2755 | 0.98 | 0.02 | 0.00 | 0.00 | A | 22 | 0.98 |
| 22 | 0 | 39 | 0 | 69 | 108 | 0.00 | 0.36 | 0.00 | 0.64 | C | 10 | 0.64 |
| 23 | 126 | 32 | 2602 | 0 | 2760 | 0.05 | 0.01 | 0.94 | 0.00 | G | 19 | 0.94 |
| 24 | 168 | 0 | 0 | 45 | 213 | 0.79 | 0.00 | 0.00 | 0.21 | A | 5 | 0.79 |
| 25 | 0 | 1194 | 58 | 54 | 1306 | 0.00 | 0.91 | 0.04 | 0.04 | T | 5 | 0.91 |
| 26 | 1112 | 0 | 57 | 30 | 1199 | 0.93 | 0.00 | 0.05 | 0.03 | A | 9 | 0.93 |
| 27 | 0 | 982 | 21 | 0 | 1003 | 0.00 | 0.98 | 0.02 | 0.00 | T | 15 | 0.98 |
| 28 | 108 | 739 | 0 | 499 | 1346 | 0.08 | 0.55 | 0.00 | 0.37 | T | 10 | 0.55 |
| 29 | 0 | 0 | 983 | 0 | 983 | 0.00 | 0.00 | 1.00 | 0.00 | G | 12 | 1.00 |
| 30 | 120 | 42 | 0 | 376 | 538 | 0.22 | 0.08 | 0.00 | 0.70 | C | 8 | 0.70 |
| 31 | 0 | 0 | 429 | 0 | 429 | 0.00 | 0.00 | 1.00 | 0.00 | G | 11 | 1.00 |
| 32 | 574 | 0 | 1 | 25 | 600 | 0.96 | 0.00 | 0.00 | 0.04 | A | 16 | 0.96 |
| 33 | 74 | 662 | 7 | 24 | 767 | 0.10 | 0.86 | 0.01 | 0.03 | T | 13 | 0.86 |
| 34 | 384 | 0 | 375 | 40 | 799 | 0.48 | 0.00 | 0.47 | 0.05 | A | 9 | 0.48 |
| 35 | 0 | 471 | 0 | 0 | 471 | 0.00 | 1.00 | 0.00 | 0.00 | T | 12 | 1.00 |
| 36 | 263 | 0 | 426 | 0 | 689 | 0.38 | 0.00 | 0.62 | 0.00 | G | 13 | 0.62 |
| 37 | 259 | 4 | 0 | 410 | 673 | 0.38 | 0.01 | 0.00 | 0.61 | C | 12 | 0.61 |
| 38 | 0 | 37 | 352 | 8 | 397 | 0.00 | 0.09 | 0.89 | 0.02 | G | 11 | 0.89 |
| 39 | 403 | 0 | 0 | 17 | 420 | 0.96 | 0.00 | 0.00 | 0.04 | A | 16 | 0.96 |
| 40 | 225 | 0 | 221 | 10 | 456 | 0.49 | 0.00 | 0.48 | 0.02 | A | 9 | 0.49 |
| 41 | 0 | 169 | 465 | 11 | 645 | 0.00 | 0.26 | 0.72 | 0.02 | G | 21 | 0.72 |
| 42 | 27 | 410 | 1 | 0 | 438 | 0.06 | 0.94 | 0.00 | 0.00 | T | 15 | 0.94 |
| 43 | 32 | 169 | 1 | 467 | 669 | 0.05 | 0.25 | 0.00 | 0.70 | C | 15 | 0.70 |
| 44 | 16 | 2 | 337 | 0 | 355 | 0.05 | 0.01 | 0.95 | 0.00 | G | 15 | 0.95 |
| 45 | 12 | 112 | 333 | 9 | 466 | 0.03 | 0.24 | 0.71 | 0.02 | G | 12 | 0.71 |
| 46 | 13 | 0 | 308 | 15 | 336 | 0.04 | 0.00 | 0.92 | 0.04 | G | 8 | 0.92 |
| 47 | 0 | 238 | 0 | 7 | 245 | 0.00 | 0.97 | 0.00 | 0.03 | T | 21 | 0.97 |
| 48 | 130 | 2 | 692 | 44 | 868 | 0.15 | 0.00 | 0.80 | 0.05 | G | 36 | 0.80 |
| 49 | 23 | 103 | 279 | 5 | 410 | 0.06 | 0.25 | 0.68 | 0.01 | G | 26 | 0.68 |
| 50 | 24 | 115 | 226 | 1 | 366 | 0.07 | 0.31 | 0.62 | 0.00 | G | 12 | 0.62 |
| 51 | 0 | 82 | 3 | 337 | 422 | 0.00 | 0.19 | 0.01 | 0.80 | C | 24 | 0.80 |
| 52 | 32 | 0 | 366 | 132 | 530 | 0.06 | 0.00 | 0.69 | 0.25 | G | 24 | 0.69 |
| 53 | 3 | 3 | 302 | 81 | 389 | 0.01 | 0.01 | 0.78 | 0.21 | G | 14 | 0.78 |
| 54 | 0 | 99 | 164 | 0 | 263 | 0.00 | 0.38 | 0.62 | 0.00 | G | 9 | 0.62 |
| 55 | 13 | 241 | 2 | 160 | 416 | 0.03 | 0.58 | 0.00 | 0.38 | T | 10 | 0.58 |
| 56 | 10 | 0 | 31 | 443 | 484 | 0.02 | 0.00 | 0.06 | 0.92 | C | 27 | 0.92 |
| 57 | 68 | 32 | 242 | 0 | 342 | 0.20 | 0.09 | 0.71 | 0.00 | G | 11 | 0.71 |
| 58 | 29 | 229 | 1 | 107 | 366 | 0.08 | 0.63 | 0.00 | 0.29 | T | 11 | 0.63 |
| 59 | 0 | 422 | 2 | 0 | 424 | 0.00 | 1.00 | 0.00 | 0.00 | T | 26 | 1.00 |
| 60 | 293 | 21 | 222 | 0 | 536 | 0.55 | 0.04 | 0.41 | 0.00 | A | 15 | 0.55 |
| 61 | 0 | 71 | 200 | 30 | 301 | 0.00 | 0.24 | 0.66 | 0.10 | G | 10 | 0.66 |
| 62 | 7 | 260 | 101 | 41 | 409 | 0.02 | 0.64 | 0.25 | 0.10 | T | 16 | 0.64 |
| 63 | 12 | 383 | 1 | 117 | 513 | 0.02 | 0.75 | 0.00 | 0.23 | T | 24 | 0.75 |
| 64 | 8 | 326 | 0 | 0 | 334 | 0.02 | 0.98 | 0.00 | 0.00 | T | 25 | 0.98 |
| 65 | 7 | 73 | 0 | 439 | 519 | 0.01 | 0.14 | 0.00 | 0.85 | C | 38 | 0.85 |
| 66 | 5 | 0 | 209 | 25 | 239 | 0.02 | 0.00 | 0.87 | 0.10 | G | 18 | 0.87 |
| 67 | 32 | 208 | 2 | 123 | 365 | 0.09 | 0.57 | 0.01 | 0.34 | T | 11 | 0.57 |
| 68 | 47 | 429 | 0 | 19 | 495 | 0.09 | 0.87 | 0.00 | 0.04 | T | 13 | 0.87 |
| 69 | 508 | 321 | 1 | 40 | 870 | 0.58 | 0.37 | 0.00 | 0.05 | A | 12 | 0.58 |
| 70 | 133 | 331 | 3 | 41 | 508 | 0.26 | 0.65 | 0.01 | 0.08 | T | 11 | 0.65 |
| 71 | 0 | 4 | 479 | 0 | 483 | 0.00 | 0.01 | 0.99 | 0.00 | G | 19 | 0.99 |
| 72 | 245 | 1 | 250 | 14 | 510 | 0.48 | 0.00 | 0.49 | 0.03 | G | 13 | 0.49 |
| 73 | 2 | 6 | 266 | 93 | 367 | 0.01 | 0.02 | 0.72 | 0.25 | G | 13 | 0.72 |
| 74 | 8 | 0 | 274 | 19 | 301 | 0.03 | 0.00 | 0.91 | 0.06 | G | 16 | 0.91 |
| 75 | 461 | 24 | 0 | 1 | 486 | 0.95 | 0.05 | 0.00 | 0.00 | A | 49 | 0.95 |
| 76 | 21 | 3 | 260 | 28 | 312 | 0.07 | 0.01 | 0.83 | 0.09 | G | 30 | 0.83 |
| 77 | 56 | 14 | 366 | 1 | 437 | 0.13 | 0.03 | 0.84 | 0.00 | G | 59 | 0.84 |
| 78 | 1 | 0 | 327 | 0 | 328 | 0.00 | 0.00 | 1.00 | 0.00 | G | 34 | 1.00 |
| 79 | 2 | 0 | 343 | 2 | 347 | 0.01 | 0.00 | 0.99 | 0.01 | G | 34 | 0.99 |
| 80 | 0 | 329 | 3 | 2 | 334 | 0.00 | 0.99 | 0.01 | 0.01 | T | 18 | 0.99 |
| 81 | 9 | 383 | 8 | 129 | 529 | 0.02 | 0.72 | 0.02 | 0.24 | T | 24 | 0.72 |
| 82 | 15 | 0 | 3 | 648 | 666 | 0.02 | 0.00 | 0.00 | 0.97 | C | 34 | 0.97 |
| 83 | 0 | 62 | 240 | 0 | 302 | 0.00 | 0.21 | 0.79 | 0.00 | G | 12 | 0.79 |
| 84 | 3 | 76 | 0 | 487 | 566 | 0.01 | 0.13 | 0.00 | 0.86 | C | 30 | 0.86 |
| 85 | 39 | 120 | 393 | 87 | 639 | 0.06 | 0.19 | 0.62 | 0.14 | G | 24 | 0.62 |
| 86 | 0 | 380 | 16 | 0 | 396 | 0.00 | 0.96 | 0.04 | 0.00 | T | 38 | 0.96 |
| 87 | 69 | 398 | 4 | 39 | 510 | 0.14 | 0.78 | 0.01 | 0.08 | T | 40 | 0.78 |
| 88 | 92 | 23 | 385 | 26 | 526 | 0.17 | 0.04 | 0.73 | 0.05 | G | 38 | 0.73 |
| 89 | 48 | 229 | 44 | 28 | 349 | 0.14 | 0.66 | 0.13 | 0.08 | T | 35 | 0.66 |
| 90 | 58 | 359 | 0 | 0 | 417 | 0.14 | 0.86 | 0.00 | 0.00 | T | 48 | 0.86 |
| 91 | 45 | 0 | 370 | 13 | 428 | 0.11 | 0.00 | 0.86 | 0.03 | G | 50 | 0.86 |
| 92 | 371 | 32 | 26 | 26 | 455 | 0.82 | 0.07 | 0.06 | 0.06 | A | 59 | 0.82 |
| 93 | 5 | 294 | 3 | 0 | 302 | 0.02 | 0.97 | 0.01 | 0.00 | T | 49 | 0.97 |
| 94 | 24 | 376 | 5 | 41 | 446 | 0.05 | 0.84 | 0.01 | 0.09 | T | 62 | 0.84 |
| 95 | 4 | 14 | 572 | 16 | 606 | 0.01 | 0.02 | 0.94 | 0.03 | G | 62 | 0.94 |
| 96 | 1 | 18 | 222 | 7 | 248 | 0.00 | 0.07 | 0.90 | 0.03 | G | 59 | 0.90 |
| 97 | 15 | 217 | 2 | 15 | 249 | 0.06 | 0.87 | 0.01 | 0.06 | T | 62 | 0.87 |
| 98 | 6 | 353 | 22 | 0 | 381 | 0.02 | 0.93 | 0.06 | 0.00 | T | 62 | 0.93 |
| 99 | 12 | 0 | 430 | 18 | 460 | 0.03 | 0.00 | 0.93 | 0.04 | G | 62 | 0.93 |
| 100 | 0 | 235 | 8 | 35 | 278 | 0.00 | 0.85 | 0.03 | 0.13 | T | 59 | 0.85 |
| 101 | 36 | 0 | 478 | 0 | 514 | 0.07 | 0.00 | 0.93 | 0.00 | G | 62 | 0.93 |
| 102 | 42 | 10 | 256 | 47 | 355 | 0.12 | 0.03 | 0.72 | 0.13 | G | 59 | 0.72 |
| 103 | 1 | 209 | 6 | 25 | 241 | 0.00 | 0.87 | 0.02 | 0.10 | T | 51 | 0.87 |
| 104 | 0 | 24 | 6 | 381 | 411 | 0.00 | 0.06 | 0.01 | 0.93 | C | 62 | 0.93 |
| 105 | 34 | 38 | 212 | 6 | 290 | 0.12 | 0.13 | 0.73 | 0.02 | G | 59 | 0.73 |
| 106 | 18 | 38 | 261 | 11 | 328 | 0.05 | 0.12 | 0.80 | 0.03 | G | 59 | 0.80 |
| 107 | 4 | 195 | 3 | 1 | 203 | 0.02 | 0.96 | 0.01 | 0.00 | T | 59 | 0.96 |
| 108 | 298 | 0 | 2 | 23 | 323 | 0.92 | 0.00 | 0.01 | 0.07 | A | 62 | 0.92 |
| 109 | 0 | 2 | 165 | 17 | 184 | 0.00 | 0.01 | 0.90 | 0.09 | G | 51 | 0.90 |
| 110 | 30 | 6 | 315 | 12 | 363 | 0.08 | 0.02 | 0.87 | 0.03 | G | 56 | 0.87 |
| 111 | 34 | 213 | 6 | 0 | 253 | 0.13 | 0.84 | 0.02 | 0.00 | T | 51 | 0.84 |
| 112 | 8 | 3 | 380 | 39 | 430 | 0.02 | 0.01 | 0.88 | 0.09 | G | 59 | 0.88 |
| 113 | 319 | 21 | 5 | 51 | 396 | 0.81 | 0.05 | 0.01 | 0.13 | A | 59 | 0.81 |
| 114 | 253 | 30 | 16 | 50 | 349 | 0.72 | 0.09 | 0.05 | 0.14 | A | 51 | 0.72 |
| 115 | 0 | 282 | 28 | 21 | 331 | 0.00 | 0.85 | 0.08 | 0.06 | T | 56 | 0.85 |
| 116 | 12 | 415 | 27 | 21 | 475 | 0.03 | 0.87 | 0.06 | 0.04 | T | 56 | 0.87 |
| 117 | 1 | 309 | 1 | 0 | 311 | 0.00 | 0.99 | 0.00 | 0.00 | T | 62 | 0.99 |
| 118 | 7 | 305 | 0 | 0 | 312 | 0.02 | 0.98 | 0.00 | 0.00 | T | 62 | 0.98 |
| 119 | 7 | 247 | 13 | 9 | 276 | 0.03 | 0.89 | 0.05 | 0.03 | T | 59 | 0.89 |
| 120 | 282 | 3 | 0 | 39 | 324 | 0.87 | 0.01 | 0.00 | 0.12 | A | 59 | 0.87 |
| 121 | 14 | 1 | 134 | 1 | 150 | 0.09 | 0.01 | 0.89 | 0.01 | G | 43 | 0.89 |
| 122 | 31 | 215 | 28 | 10 | 284 | 0.11 | 0.76 | 0.10 | 0.04 | T | 56 | 0.76 |
| 123 | 19 | 266 | 22 | 38 | 345 | 0.06 | 0.77 | 0.06 | 0.11 | T | 59 | 0.77 |
| 124 | 226 | 4 | 14 | 0 | 244 | 0.93 | 0.02 | 0.06 | 0.00 | A | 43 | 0.93 |
| 125 | 199 | 4 | 0 | 16 | 219 | 0.91 | 0.02 | 0.00 | 0.07 | A | 37 | 0.91 |
| 126 | 0 | 212 | 0 | 33 | 245 | 0.00 | 0.87 | 0.00 | 0.13 | T | 36 | 0.87 |
| 127 | 25 | 330 | 3 | 60 | 418 | 0.06 | 0.79 | 0.01 | 0.14 | T | 36 | 0.79 |
| 128 | 278 | 23 | 1 | 2 | 304 | 0.91 | 0.08 | 0.00 | 0.01 | A | 44 | 0.91 |
| 129 | 4 | 8 | 91 | 37 | 140 | 0.03 | 0.06 | 0.65 | 0.26 | G | 17 | 0.65 |
| 130 | 22 | 26 | 6 | 176 | 230 | 0.10 | 0.11 | 0.03 | 0.77 | C | 46 | 0.77 |
| 131 | 35 | 0 | 281 | 6 | 322 | 0.11 | 0.00 | 0.87 | 0.02 | G | 59 | 0.87 |
| 132 | 11 | 0 | 208 | 0 | 219 | 0.05 | 0.00 | 0.95 | 0.00 | G | 46 | 0.95 |
| 133 | 21 | 196 | 3 | 0 | 220 | 0.10 | 0.89 | 0.01 | 0.00 | T | 49 | 0.89 |
| 134 | 247 | 0 | 0 | 25 | 272 | 0.91 | 0.00 | 0.00 | 0.09 | A | 51 | 0.91 |
| 135 | 6 | 59 | 7 | 227 | 299 | 0.02 | 0.20 | 0.02 | 0.76 | C | 49 | 0.76 |
| 136 | 39 | 0 | 187 | 26 | 252 | 0.15 | 0.00 | 0.74 | 0.10 | G | 43 | 0.74 |
| 137 | 13 | 41 | 279 | 14 | 347 | 0.04 | 0.12 | 0.80 | 0.04 | G | 51 | 0.80 |
| 138 | 10 | 9 | 194 | 16 | 229 | 0.04 | 0.04 | 0.85 | 0.07 | G | 56 | 0.85 |
| 139 | 13 | 0 | 233 | 17 | 263 | 0.05 | 0.00 | 0.89 | 0.06 | G | 59 | 0.89 |
| 140 | 1 | 38 | 224 | 1 | 264 | 0.00 | 0.14 | 0.85 | 0.00 | G | 59 | 0.85 |
| 141 | 14 | 29 | 234 | 35 | 312 | 0.04 | 0.09 | 0.75 | 0.11 | G | 59 | 0.75 |
| 142 | 9 | 0 | 8 | 199 | 216 | 0.04 | 0.00 | 0.04 | 0.92 | C | 50 | 0.92 |
| 143 | 27 | 26 | 267 | 4 | 324 | 0.08 | 0.08 | 0.82 | 0.01 | G | 56 | 0.82 |
| 144 | 46 | 5 | 208 | 1 | 260 | 0.18 | 0.02 | 0.80 | 0.00 | G | 50 | 0.80 |
| 145 | 0 | 183 | 7 | 1 | 191 | 0.00 | 0.96 | 0.04 | 0.01 | T | 49 | 0.96 |
| 146 | 34 | 2 | 385 | 17 | 438 | 0.08 | 0.00 | 0.88 | 0.04 | G | 59 | 0.88 |
| 147 | 13 | 177 | 22 | 8 | 220 | 0.06 | 0.80 | 0.10 | 0.04 | T | 56 | 0.80 |
| 148 | 6 | 262 | 0 | 7 | 275 | 0.02 | 0.95 | 0.00 | 0.03 | T | 54 | 0.95 |
| 149 | 14 | 228 | 9 | 2 | 253 | 0.06 | 0.90 | 0.04 | 0.01 | T | 28 | 0.90 |
| 150 | 14 | 225 | 0 | 4 | 243 | 0.06 | 0.93 | 0.00 | 0.02 | T | 24 | 0.93 |
| 151 | 92 | 32 | 0 | 245 | 369 | 0.25 | 0.09 | 0.00 | 0.66 | C | 11 | 0.66 |
| 152 | 0 | 105 | 227 | 28 | 360 | 0.00 | 0.29 | 0.63 | 0.08 | G | 13 | 0.63 |
| 153 | 217 | 132 | 405 | 59 | 813 | 0.27 | 0.16 | 0.50 | 0.07 | G | 23 | 0.50 |
| 154 | 241 | 122 | 444 | 85 | 892 | 0.27 | 0.14 | 0.50 | 0.10 | G | 23 | 0.50 |
| 155 | 0 | 0 | 484 | 55 | 539 | 0.00 | 0.00 | 0.90 | 0.10 | G | 26 | 0.90 |
| 156 | 79 | 220 | 0 | 35 | 334 | 0.24 | 0.66 | 0.00 | 0.10 | T | 18 | 0.66 |
| 157 | 48 | 212 | 0 | 12 | 272 | 0.18 | 0.78 | 0.00 | 0.04 | T | 18 | 0.78 |
| 158 | 20 | 190 | 2 | 18 | 230 | 0.09 | 0.83 | 0.01 | 0.08 | T | 19 | 0.83 |
| 159 | 276 | 0 | 21 | 12 | 309 | 0.89 | 0.00 | 0.07 | 0.04 | A | 49 | 0.89 |
| 160 | 3 | 168 | 1 | 14 | 186 | 0.02 | 0.90 | 0.01 | 0.08 | T | 49 | 0.90 |
| 161 | 33 | 216 | 16 | 0 | 265 | 0.12 | 0.82 | 0.06 | 0.00 | T | 56 | 0.82 |
| 162 | 25 | 205 | 14 | 44 | 288 | 0.09 | 0.71 | 0.05 | 0.15 | T | 50 | 0.71 |
| 163 | 37 | 4 | 269 | 31 | 341 | 0.11 | 0.01 | 0.79 | 0.09 | G | 56 | 0.79 |
| 164 | 0 | 11 | 152 | 14 | 177 | 0.00 | 0.06 | 0.86 | 0.08 | G | 39 | 0.86 |
| 165 | 61 | 138 | 15 | 0 | 214 | 0.29 | 0.64 | 0.07 | 0.00 | T | 43 | 0.64 |
| 166 | 25 | 217 | 12 | 8 | 262 | 0.10 | 0.83 | 0.05 | 0.03 | T | 51 | 0.83 |
| 167 | 0 | 0 | 265 | 24 | 289 | 0.00 | 0.00 | 0.92 | 0.08 | G | 56 | 0.92 |
| 168 | 0 | 103 | 0 | 48 | 151 | 0.00 | 0.68 | 0.00 | 0.32 | T | 34 | 0.68 |
| 169 | 183 | 1 | 27 | 11 | 222 | 0.82 | 0.00 | 0.12 | 0.05 | A | 51 | 0.82 |
| 170 | 13 | 19 | 95 | 5 | 132 | 0.10 | 0.14 | 0.72 | 0.04 | G | 27 | 0.72 |
| 171 | 14 | 134 | 0 | 30 | 178 | 0.08 | 0.75 | 0.00 | 0.17 | T | 46 | 0.75 |
| 172 | 17 | 179 | 5 | 7 | 208 | 0.08 | 0.86 | 0.02 | 0.03 | T | 46 | 0.86 |
| 173 | 162 | 35 | 0 | 4 | 201 | 0.81 | 0.17 | 0.00 | 0.02 | A | 46 | 0.81 |
| 174 | 0 | 0 | 5 | 212 | 217 | 0.00 | 0.00 | 0.02 | 0.98 | C | 49 | 0.98 |
| 175 | 16 | 40 | 127 | 4 | 187 | 0.09 | 0.21 | 0.68 | 0.02 | G | 40 | 0.68 |
| 176 | 8 | 143 | 2 | 41 | 194 | 0.04 | 0.74 | 0.01 | 0.21 | T | 43 | 0.74 |
| 177 | 193 | 25 | 6 | 31 | 255 | 0.76 | 0.10 | 0.02 | 0.12 | A | 51 | 0.76 |
| 178 | 0 | 158 | 6 | 20 | 184 | 0.00 | 0.86 | 0.03 | 0.11 | T | 43 | 0.86 |
| 179 | 42 | 188 | 12 | 7 | 249 | 0.17 | 0.76 | 0.05 | 0.03 | T | 46 | 0.76 |
| 180 | 63 | 156 | 12 | 3 | 234 | 0.27 | 0.67 | 0.05 | 0.01 | T | 36 | 0.67 |
| 181 | 37 | 187 | 4 | 10 | 238 | 0.16 | 0.79 | 0.02 | 0.04 | T | 48 | 0.79 |
| 182 | 23 | 196 | 16 | 6 | 241 | 0.10 | 0.81 | 0.07 | 0.02 | T | 50 | 0.81 |
| 183 | 41 | 189 | 21 | 15 | 266 | 0.15 | 0.71 | 0.08 | 0.06 | T | 50 | 0.71 |
| 184 | 0 | 189 | 10 | 32 | 231 | 0.00 | 0.82 | 0.04 | 0.14 | T | 43 | 0.82 |
| 185 | 18 | 181 | 0 | 27 | 226 | 0.08 | 0.80 | 0.00 | 0.12 | T | 40 | 0.80 |
| 186 | 19 | 177 | 12 | 8 | 216 | 0.09 | 0.82 | 0.06 | 0.04 | T | 39 | 0.82 |
| 187 | 125 | 46 | 4 | 38 | 213 | 0.59 | 0.22 | 0.02 | 0.18 | A | 23 | 0.59 |
| 188 | 22 | 11 | 77 | 20 | 130 | 0.17 | 0.08 | 0.59 | 0.15 | G | 13 | 0.59 |
| 189 | 30 | 107 | 29 | 1 | 167 | 0.18 | 0.64 | 0.17 | 0.01 | T | 28 | 0.64 |
| 190 | 43 | 1 | 219 | 3 | 266 | 0.16 | 0.00 | 0.82 | 0.01 | G | 28 | 0.82 |
| 191 | 0 | 30 | 78 | 29 | 137 | 0.00 | 0.22 | 0.57 | 0.21 | G | 26 | 0.57 |
| 192 | 1 | 17 | 25 | 121 | 164 | 0.01 | 0.10 | 0.15 | 0.74 | C | 35 | 0.74 |
| 193 | 14 | 25 | 92 | 34 | 165 | 0.08 | 0.15 | 0.56 | 0.21 | G | 27 | 0.56 |
| 194 | 36 | 116 | 12 | 17 | 181 | 0.20 | 0.64 | 0.07 | 0.09 | T | 43 | 0.64 |
| 195 | 0 | 33 | 7 | 162 | 202 | 0.00 | 0.16 | 0.03 | 0.80 | C | 50 | 0.80 |
| 196 | 38 | 26 | 64 | 0 | 128 | 0.30 | 0.20 | 0.50 | 0.00 | G | 23 | 0.50 |
| 197 | 35 | 26 | 104 | 24 | 189 | 0.19 | 0.14 | 0.55 | 0.13 | G | 24 | 0.55 |
| 198 | 147 | 0 | 11 | 32 | 190 | 0.77 | 0.00 | 0.06 | 0.17 | A | 34 | 0.77 |
| 199 | 99 | 32 | 14 | 57 | 202 | 0.49 | 0.16 | 0.07 | 0.28 | A | 24 | 0.49 |
| 200 | 3 | 104 | 11 | 45 | 163 | 0.02 | 0.64 | 0.07 | 0.28 | T | 27 | 0.64 |
| 201 | 31 | 169 | 17 | 0 | 217 | 0.14 | 0.78 | 0.08 | 0.00 | T | 35 | 0.78 |
| 202 | 0 | 11 | 145 | 36 | 192 | 0.00 | 0.06 | 0.76 | 0.19 | G | 34 | 0.76 |
| 203 | 51 | 57 | 5 | 39 | 152 | 0.34 | 0.38 | 0.03 | 0.26 | T | 19 | 0.38 |
| 204 | 91 | 1 | 10 | 0 | 102 | 0.89 | 0.01 | 0.10 | 0.00 | A | 13 | 0.89 |
| 205 | 109 | 0 | 15 | 0 | 124 | 0.88 | 0.00 | 0.12 | 0.00 | A | 18 | 0.88 |
| 206 | 97 | 46 | 6 | 0 | 149 | 0.65 | 0.31 | 0.04 | 0.00 | A | 20 | 0.65 |
| 207 | 47 | 56 | 80 | 5 | 188 | 0.25 | 0.30 | 0.43 | 0.03 | G | 12 | 0.43 |
| 208 | 48 | 119 | 2 | 0 | 169 | 0.28 | 0.70 | 0.01 | 0.00 | T | 23 | 0.70 |
| 209 | 140 | 48 | 16 | 7 | 211 | 0.66 | 0.23 | 0.08 | 0.03 | A | 23 | 0.66 |
| 210 | 13 | 120 | 3 | 35 | 171 | 0.08 | 0.70 | 0.02 | 0.20 | T | 30 | 0.70 |
| 211 | 38 | 138 | 7 | 0 | 183 | 0.21 | 0.75 | 0.04 | 0.00 | T | 34 | 0.75 |
| 212 | 23 | 132 | 26 | 21 | 202 | 0.11 | 0.65 | 0.13 | 0.10 | T | 43 | 0.65 |
| 213 | 0 | 26 | 157 | 23 | 206 | 0.00 | 0.13 | 0.76 | 0.11 | G | 43 | 0.76 |
| 214 | 6 | 79 | 34 | 33 | 152 | 0.04 | 0.52 | 0.22 | 0.22 | T | 31 | 0.52 |
| 215 | 43 | 15 | 124 | 2 | 184 | 0.23 | 0.08 | 0.67 | 0.01 | G | 34 | 0.67 |
| 216 | 158 | 6 | 25 | 14 | 203 | 0.78 | 0.03 | 0.12 | 0.07 | A | 43 | 0.78 |
| 217 | 16 | 26 | 76 | 51 | 169 | 0.09 | 0.15 | 0.45 | 0.30 | G | 19 | 0.45 |
| 218 | 1 | 159 | 12 | 46 | 218 | 0.00 | 0.73 | 0.06 | 0.21 | T | 43 | 0.73 |
| 219 | 19 | 142 | 1 | 40 | 202 | 0.09 | 0.70 | 0.00 | 0.20 | T | 43 | 0.70 |
| 220 | 13 | 146 | 6 | 13 | 178 | 0.07 | 0.82 | 0.03 | 0.07 | T | 51 | 0.82 |
| 221 | 7 | 33 | 24 | 129 | 193 | 0.04 | 0.17 | 0.12 | 0.67 | C | 34 | 0.67 |
| 222 | 2 | 17 | 10 | 143 | 172 | 0.01 | 0.10 | 0.06 | 0.83 | C | 37 | 0.83 |
| 223 | 7 | 92 | 24 | 28 | 151 | 0.05 | 0.61 | 0.16 | 0.19 | T | 30 | 0.61 |
| 224 | 52 | 2 | 20 | 135 | 209 | 0.25 | 0.01 | 0.10 | 0.65 | C | 39 | 0.65 |
| 225 | 5 | 20 | 73 | 15 | 113 | 0.04 | 0.18 | 0.65 | 0.13 | G | 13 | 0.65 |
| 226 | 94 | 0 | 40 | 36 | 170 | 0.55 | 0.00 | 0.24 | 0.21 | A | 10 | 0.55 |
| 227 | 3 | 20 | 37 | 96 | 156 | 0.02 | 0.13 | 0.24 | 0.62 | C | 10 | 0.62 |
| 228 | 6 | 118 | 55 | 4 | 183 | 0.03 | 0.64 | 0.30 | 0.02 | T | 18 | 0.64 |
| 229 | 6 | 89 | 231 | 6 | 332 | 0.02 | 0.27 | 0.70 | 0.02 | G | 34 | 0.70 |
| 230 | 41 | 106 | 40 | 13 | 200 | 0.20 | 0.53 | 0.20 | 0.06 | T | 12 | 0.53 |
| 231 | 0 | 13 | 117 | 73 | 203 | 0.00 | 0.06 | 0.58 | 0.36 | G | 12 | 0.58 |
| 232 | 21 | 50 | 47 | 97 | 215 | 0.10 | 0.23 | 0.22 | 0.45 | C | 11 | 0.45 |
| 233 | 7 | 108 | 0 | 130 | 245 | 0.03 | 0.44 | 0.00 | 0.53 | C | 10 | 0.53 |
| 234 | 74 | 144 | 30 | 3 | 251 | 0.29 | 0.57 | 0.12 | 0.01 | T | 10 | 0.57 |
| 235 | 190 | 128 | 11 | 93 | 422 | 0.45 | 0.30 | 0.03 | 0.22 | A | 10 | 0.45 |
| 236 | 48 | 40 | 32 | 138 | 258 | 0.19 | 0.16 | 0.12 | 0.53 | C | 10 | 0.53 |
| 237 | 82 | 86 | 22 | 19 | 209 | 0.39 | 0.41 | 0.11 | 0.09 | T | 10 | 0.41 |
| 238 | 241 | 25 | 4 | 25 | 295 | 0.82 | 0.08 | 0.01 | 0.08 | A | 34 | 0.82 |
| 239 | 138 | 22 | 27 | 3 | 190 | 0.73 | 0.12 | 0.14 | 0.02 | A | 21 | 0.73 |
| 240 | 7 | 32 | 20 | 9 | 68 | 0.10 | 0.47 | 0.29 | 0.13 | T | 10 | 0.47 |
| 241 | 6 | 2 | 26 | 23 | 57 | 0.11 | 0.04 | 0.46 | 0.40 | G | 13 | 0.46 |
| 242 | 40 | 22 | 0 | 23 | 85 | 0.47 | 0.26 | 0.00 | 0.27 | A | 8 | 0.47 |
| 243 | 197 | 3 | 24 | 0 | 224 | 0.88 | 0.01 | 0.11 | 0.00 | A | 46 | 0.88 |
| 244 | 41 | 42 | 11 | 8 | 102 | 0.40 | 0.41 | 0.11 | 0.08 | T | 13 | 0.41 |
| 245 | 0 | 14 | 36 | 9 | 59 | 0.00 | 0.24 | 0.61 | 0.15 | G | 8 | 0.61 |
| 246 | 6 | 13 | 20 | 22 | 61 | 0.10 | 0.21 | 0.33 | 0.36 | N | 8 | 0.36 |
| 247 | 12 | 1 | 0 | 43 | 56 | 0.21 | 0.02 | 0.00 | 0.77 | C | 16 | 0.77 |
| 248 | 24 | 36 | 23 | 8 | 91 | 0.26 | 0.40 | 0.25 | 0.09 | T | 11 | 0.40 |
| 249 | 1 | 0 | 14 | 0 | 15 | 0.07 | 0.00 | 0.93 | 0.00 | G | 13 | 0.93 |
| 250 | 29 | 31 | 1 | 21 | 82 | 0.35 | 0.38 | 0.01 | 0.26 | T | 10 | 0.38 |
| 251 | 0 | 0 | 11 | 23 | 34 | 0.00 | 0.00 | 0.32 | 0.68 | C | 8 | 0.68 |
| 252 | 7 | 10 | 16 | 2 | 35 | 0.20 | 0.29 | 0.46 | 0.06 | G | 7 | 0.46 |
| 253 | 1 | 4 | 15 | 2 | 22 | 0.05 | 0.18 | 0.68 | 0.09 | G | 6 | 0.68 |
| 254 | 31 | 0 | 0 | 14 | 45 | 0.69 | 0.00 | 0.00 | 0.31 | A | 22 | 0.69 |
| 255 | 0 | 10 | 6 | 11 | 27 | 0.00 | 0.37 | 0.22 | 0.41 | C | 8 | 0.41 |
| 256 | 5 | 6 | 28 | 11 | 50 | 0.10 | 0.12 | 0.56 | 0.22 | G | 9 | 0.56 |
| 257 | 1 | 14 | 5 | 7 | 27 | 0.04 | 0.52 | 0.19 | 0.26 | T | 7 | 0.52 |
| 258 | 38 | 7 | 0 | 5 | 50 | 0.76 | 0.14 | 0.00 | 0.10 | A | 9 | 0.76 |
| 259 | 32 | 0 | 14 | 30 | 76 | 0.42 | 0.00 | 0.18 | 0.39 | A | 13 | 0.42 |
| 260 | 37 | 29 | 0 | 14 | 80 | 0.46 | 0.36 | 0.00 | 0.17 | A | 13 | 0.46 |
| 261 | 26 | 78 | 27 | 0 | 131 | 0.20 | 0.60 | 0.21 | 0.00 | T | 34 | 0.60 |
| 262 | 0 | 19 | 25 | 47 | 91 | 0.00 | 0.21 | 0.27 | 0.52 | C | 16 | 0.52 |
| 263 | 61 | 0 | 13 | 0 | 74 | 0.82 | 0.00 | 0.18 | 0.00 | A | 23 | 0.82 |
| 264 | 25 | 27 | 0 | 40 | 92 | 0.27 | 0.29 | 0.00 | 0.43 | C | 13 | 0.43 |
| 265 | 10 | 0 | 38 | 21 | 69 | 0.14 | 0.00 | 0.55 | 0.30 | G | 21 | 0.55 |
| 266 | 7 | 13 | 6 | 43 | 69 | 0.10 | 0.19 | 0.09 | 0.62 | C | 24 | 0.62 |
| 267 | 14 | 15 | 6 | 0 | 35 | 0.40 | 0.43 | 0.17 | 0.00 | T | 10 | 0.43 |
| 268 | 0 | 0 | 17 | 33 | 50 | 0.00 | 0.00 | 0.34 | 0.66 | C | 27 | 0.66 |
| 269 | 18 | 15 | 16 | 12 | 61 | 0.30 | 0.25 | 0.26 | 0.20 | N | 10 | 0.30 |
| 270 | 0 | 0 | 9 | 24 | 33 | 0.00 | 0.00 | 0.27 | 0.73 | C | 14 | 0.73 |
| 271 | 12 | 9 | 8 | 0 | 29 | 0.41 | 0.31 | 0.28 | 0.00 | A | 5 | 0.41 |
| 272 | 26 | 8 | 14 | 0 | 48 | 0.54 | 0.17 | 0.29 | 0.00 | A | 16 | 0.54 |
| 273 | 9 | 10 | 14 | 32 | 65 | 0.14 | 0.15 | 0.22 | 0.49 | N | 18 | 0.49 |
| 274 | 1 | 0 | 14 | 1 | 16 | 0.06 | 0.00 | 0.88 | 0.06 | G | 11 | 0.88 |
| 275 | 26 | 7 | 6 | 25 | 64 | 0.41 | 0.11 | 0.09 | 0.39 | A | 13 | 0.41 |
| 276 | 36 | 29 | 11 | 14 | 90 | 0.40 | 0.32 | 0.12 | 0.16 | N | 9 | 0.40 |
| 277 | 62 | 26 | 0 | 16 | 104 | 0.60 | 0.25 | 0.00 | 0.15 | A | 11 | 0.60 |
| 278 | 65 | 17 | 48 | 27 | 157 | 0.41 | 0.11 | 0.31 | 0.17 | N | 13 | 0.41 |
| 279 | 83 | 3 | 69 | 57 | 212 | 0.39 | 0.01 | 0.33 | 0.27 | A | 13 | 0.39 |
| 280 | 67 | 52 | 69 | 35 | 223 | 0.30 | 0.23 | 0.31 | 0.16 | N | 13 | 0.31 |
| 281 | 81 | 0 | 96 | 23 | 200 | 0.41 | 0.00 | 0.48 | 0.12 | G | 18 | 0.48 |
| 282 | 80 | 1 | 51 | 0 | 132 | 0.61 | 0.01 | 0.39 | 0.00 | A | 14 | 0.61 |
| 283 | 27 | 25 | 42 | 0 | 94 | 0.29 | 0.27 | 0.45 | 0.00 | G | 15 | 0.45 |
| 284 | 46 | 0 | 36 | 22 | 104 | 0.44 | 0.00 | 0.35 | 0.21 | A | 13 | 0.44 |
| 285 | 29 | 5 | 25 | 0 | 59 | 0.49 | 0.08 | 0.42 | 0.00 | A | 9 | 0.49 |
| 286 | 31 | 0 | 25 | 5 | 61 | 0.51 | 0.00 | 0.41 | 0.08 | A | 13 | 0.51 |
| 287 | 16 | 12 | 19 | 20 | 67 | 0.24 | 0.18 | 0.28 | 0.30 | N | 8 | 0.30 |
| 288 | 10 | 17 | 0 | 55 | 82 | 0.12 | 0.21 | 0.00 | 0.67 | C | 21 | 0.67 |
| 289 | 0 | 23 | 0 | 17 | 40 | 0.00 | 0.58 | 0.00 | 0.42 | T | 12 | 0.58 |
| 290 | 16 | 17 | 0 | 11 | 44 | 0.36 | 0.39 | 0.00 | 0.25 | T | 11 | 0.39 |
| 291 | 14 | 7 | 0 | 20 | 41 | 0.34 | 0.17 | 0.00 | 0.49 | C | 13 | 0.49 |
| 292 | 32 | 14 | 5 | 2 | 53 | 0.60 | 0.26 | 0.09 | 0.04 | A | 16 | 0.60 |
| 293 | 3 | 19 | 3 | 2 | 27 | 0.11 | 0.70 | 0.11 | 0.07 | T | 10 | 0.70 |
| 294 | 9 | 56 | 4 | 2 | 71 | 0.13 | 0.79 | 0.06 | 0.03 | T | 34 | 0.79 |
| 295 | 0 | 38 | 3 | 0 | 41 | 0.00 | 0.93 | 0.07 | 0.00 | T | 23 | 0.93 |
| 296 | 30 | 1 | 3 | 18 | 52 | 0.58 | 0.02 | 0.06 | 0.35 | A | 26 | 0.58 |
| 297 | 0 | 11 | 6 | 22 | 39 | 0.00 | 0.28 | 0.15 | 0.56 | C | 17 | 0.56 |
| 298 | 13 | 14 | 10 | 0 | 37 | 0.35 | 0.38 | 0.27 | 0.00 | T | 11 | 0.38 |
| 299 | 30 | 6 | 0 | 9 | 45 | 0.67 | 0.13 | 0.00 | 0.20 | A | 11 | 0.67 |
| 300 | 30 | 0 | 11 | 0 | 41 | 0.73 | 0.00 | 0.27 | 0.00 | A | 20 | 0.73 |
| 301 | 1 | 35 | 0 | 7 | 43 | 0.02 | 0.81 | 0.00 | 0.16 | T | 13 | 0.81 |
| 302 | 8 | 0 | 34 | 1 | 43 | 0.19 | 0.00 | 0.79 | 0.02 | G | 11 | 0.79 |
| 303 | 37 | 0 | 18 | 1 | 56 | 0.66 | 0.00 | 0.32 | 0.02 | A | 18 | 0.66 |
| 304 | 17 | 0 | 4 | 0 | 21 | 0.81 | 0.00 | 0.19 | 0.00 | A | 10 | 0.81 |
| 305 | 21 | 23 | 0 | 18 | 62 | 0.34 | 0.37 | 0.00 | 0.29 | T | 18 | 0.37 |
| 306 | 22 | 0 | 4 | 32 | 58 | 0.38 | 0.00 | 0.07 | 0.55 | C | 18 | 0.55 |
| 307 | 0 | 14 | 2 | 23 | 39 | 0.00 | 0.36 | 0.05 | 0.59 | C | 11 | 0.59 |
| 308 | 2 | 23 | 4 | 25 | 54 | 0.04 | 0.43 | 0.07 | 0.46 | C | 13 | 0.46 |
| 309 | 9 | 0 | 12 | 33 | 54 | 0.17 | 0.00 | 0.22 | 0.61 | C | 26 | 0.61 |
| 310 | 0 | 22 | 11 | 23 | 56 | 0.00 | 0.39 | 0.20 | 0.41 | C | 9 | 0.41 |
| 311 | 5 | 21 | 0 | 0 | 26 | 0.19 | 0.81 | 0.00 | 0.00 | T | 9 | 0.81 |
| 312 | 20 | 23 | 3 | 2 | 48 | 0.42 | 0.48 | 0.06 | 0.04 | T | 12 | 0.48 |
| 313 | 1 | 0 | 0 | 44 | 45 | 0.02 | 0.00 | 0.00 | 0.98 | C | 14 | 0.98 |
| 314 | 16 | 37 | 1 | 16 | 70 | 0.23 | 0.53 | 0.01 | 0.23 | T | 9 | 0.53 |
| 315 | 35 | 0 | 4 | 6 | 45 | 0.78 | 0.00 | 0.09 | 0.13 | A | 16 | 0.78 |
| 316 | 1 | 9 | 20 | 3 | 33 | 0.03 | 0.27 | 0.61 | 0.09 | G | 8 | 0.61 |
| 317 | 33 | 1 | 8 | 20 | 62 | 0.53 | 0.02 | 0.13 | 0.32 | A | 8 | 0.53 |
| 318 | 15 | 34 | 7 | 13 | 69 | 0.22 | 0.49 | 0.10 | 0.19 | T | 10 | 0.49 |
| 319 | 15 | 33 | 2 | 0 | 50 | 0.30 | 0.66 | 0.04 | 0.00 | T | 11 | 0.66 |
| 320 | 15 | 18 | 7 | 23 | 63 | 0.24 | 0.29 | 0.11 | 0.37 | N | 11 | 0.37 |
| 321 | 18 | 0 | 15 | 11 | 44 | 0.41 | 0.00 | 0.34 | 0.25 | A | 18 | 0.41 |
| 322 | 19 | 9 | 0 | 19 | 47 | 0.40 | 0.19 | 0.00 | 0.40 | A | 12 | 0.40 |
| 323 | 30 | 18 | 11 | 11 | 70 | 0.43 | 0.26 | 0.16 | 0.16 | N | 15 | 0.43 |
| 324 | 17 | 0 | 4 | 13 | 34 | 0.50 | 0.00 | 0.12 | 0.38 | A | 13 | 0.50 |
| 325 | 8 | 0 | 10 | 8 | 26 | 0.31 | 0.00 | 0.38 | 0.31 | G | 8 | 0.38 |
| 326 | 0 | 32 | 0 | 8 | 40 | 0.00 | 0.80 | 0.00 | 0.20 | T | 10 | 0.80 |
| 327 | 0 | 7 | 25 | 19 | 51 | 0.00 | 0.14 | 0.49 | 0.37 | G | 9 | 0.49 |
| 328 | 17 | 14 | 0 | 34 | 65 | 0.26 | 0.22 | 0.00 | 0.52 | C | 10 | 0.52 |
| 329 | 11 | 4 | 31 | 11 | 57 | 0.19 | 0.07 | 0.54 | 0.19 | G | 9 | 0.54 |
| 330 | 25 | 6 | 9 | 3 | 43 | 0.58 | 0.14 | 0.21 | 0.07 | A | 12 | 0.58 |
| 331 | 14 | 19 | 17 | 2 | 52 | 0.27 | 0.37 | 0.33 | 0.04 | T | 8 | 0.37 |
| 332 | 18 | 16 | 0 | 11 | 45 | 0.40 | 0.36 | 0.00 | 0.24 | A | 10 | 0.40 |
| 333 | 21 | 20 | 17 | 19 | 77 | 0.27 | 0.26 | 0.22 | 0.25 | N | 13 | 0.27 |
| 334 | 0 | 2 | 10 | 28 | 40 | 0.00 | 0.05 | 0.25 | 0.70 | C | 16 | 0.70 |
| 335 | 11 | 16 | 3 | 26 | 56 | 0.20 | 0.29 | 0.05 | 0.46 | C | 11 | 0.46 |
| 336 | 29 | 1 | 16 | 15 | 61 | 0.48 | 0.02 | 0.26 | 0.25 | A | 16 | 0.48 |
| 337 | 0 | 42 | 0 | 5 | 47 | 0.00 | 0.89 | 0.00 | 0.11 | T | 34 | 0.89 |
| 338 | 18 | 0 | 15 | 24 | 57 | 0.32 | 0.00 | 0.26 | 0.42 | C | 18 | 0.42 |
| 339 | 0 | 0 | 11 | 36 | 47 | 0.00 | 0.00 | 0.23 | 0.77 | C | 23 | 0.77 |
| 340 | 13 | 3 | 15 | 23 | 54 | 0.24 | 0.06 | 0.28 | 0.43 | C | 13 | 0.43 |
| 341 | 27 | 33 | 11 | 4 | 75 | 0.36 | 0.44 | 0.15 | 0.05 | T | 23 | 0.44 |
| 342 | 22 | 14 | 0 | 6 | 42 | 0.52 | 0.33 | 0.00 | 0.14 | A | 11 | 0.52 |
| 343 | 19 | 12 | 16 | 13 | 60 | 0.32 | 0.20 | 0.27 | 0.22 | N | 9 | 0.32 |
| 344 | 0 | 40 | 3 | 0 | 43 | 0.00 | 0.93 | 0.07 | 0.00 | T | 17 | 0.93 |
| 345 | 23 | 0 | 11 | 0 | 34 | 0.68 | 0.00 | 0.32 | 0.00 | A | 10 | 0.68 |
| 346 | 25 | 29 | 0 | 32 | 86 | 0.29 | 0.34 | 0.00 | 0.37 | C | 8 | 0.37 |
| 347 | 10 | 19 | 8 | 9 | 46 | 0.22 | 0.41 | 0.17 | 0.20 | N | 8 | 0.41 |
| 348 | 36 | 0 | 0 | 21 | 57 | 0.63 | 0.00 | 0.00 | 0.37 | A | 10 | 0.63 |
| 349 | 0 | 39 | 8 | 14 | 61 | 0.00 | 0.64 | 0.13 | 0.23 | T | 10 | 0.64 |
| 350 | 27 | 25 | 0 | 4 | 56 | 0.48 | 0.45 | 0.00 | 0.07 | A | 5 | 0.48 |
| 351 | 4 | 16 | 3 | 41 | 64 | 0.06 | 0.25 | 0.05 | 0.64 | C | 10 | 0.64 |
| 352 | 18 | 0 | 0 | 39 | 57 | 0.32 | 0.00 | 0.00 | 0.68 | C | 21 | 0.68 |
| 353 | 8 | 5 | 7 | 38 | 58 | 0.14 | 0.09 | 0.12 | 0.66 | C | 27 | 0.66 |
| 354 | 17 | 10 | 0 | 26 | 53 | 0.32 | 0.19 | 0.00 | 0.49 | C | 13 | 0.49 |
Trimming thresholds :
| Raw sequence information | Values |
|---|---|
| Raw sequence length : | 354 bp |
| Mean of raw sequence Phred quality scores : | 25.66 |
| Quality report - Trimmed sequence information | Values |
|---|---|
| Trimmed sequence length : | 80 bp |
| Trimmed sequence start position : | 48 |
| Trimmed sequence end position : | 128 |
| Mean of trimmed sequence Phred quality scores : | 38.61 |
Trimming thresholds :
| Raw sequence information | Values |
|---|---|
| Raw sequence length : | 354 bp |
| Mean of raw sequence primary peak ratios : | 0.7 |
| Percentage of non-mixed positions on raw sequence : | 44.92 % |
| Mixed peak report - Trimmed sequence information | Values |
|---|---|
| Trimmed sequence length : | 171 bp |
| Trimmed sequence start position : | 16 |
| Trimmed sequence end position : | 186 |
| Mean of trimmed sequence primary peak ratios : | 0.82 |
| Percentage of non-mixed positions on trimmed sequence : | 72.51 % |
Warning: Trimmed sequence from the sequencing result #1 was found with insufficient length or insufficient quality and will not be used.
| Final trimmed sequence information | Values |
|---|---|
| Length : | 81 bp |
| Start position : | 48 |
| End position : | 128 |
| Mean of Phred quality scores : | 38.58 |
| Mean of primary peak ratio : | 0.82 |
| Percentage of non-mixed positions : | 72.84 % |
Sequence of primary peaks:
Length: 229 bp
## AACTTAAATTCCATAGCCCTCTAACCTTAATTACTATACCCTCTTATTGAGGGTTAATTACCGCCCCCCGTACCGCTAATTAACTAAAAATTCACCTACCGACCACAACCAATCAACAACGCGAACCCCTCCCCAAAACGAAACTAACGACCCGCCCACCCGACCTCGCATAAACGCGATAACCCTCTAACCTAAAATTACTAAACCCTTTAGTGAGGGTTAATTAACC
Open chromatogram file in a new tab
| Position | A peak | T peak | G peak | C peak | Total | A ratio | T ratio | G ratio | C ratio | Primary base | Quality score | Primary ratio |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1962 | 0 | 0 | 1563 | 3525 | 0.56 | 0.00 | 0.00 | 0.44 | A | 5 | 0.56 |
| 2 | 1821 | 750 | 0 | 0 | 2571 | 0.71 | 0.29 | 0.00 | 0.00 | A | 6 | 0.71 |
| 3 | 0 | 0 | 0 | 629 | 629 | 0.00 | 0.00 | 0.00 | 1.00 | C | 9 | 1.00 |
| 4 | 598 | 955 | 0 | 0 | 1553 | 0.39 | 0.61 | 0.00 | 0.00 | T | 14 | 0.61 |
| 5 | 0 | 1616 | 0 | 0 | 1616 | 0.00 | 1.00 | 0.00 | 0.00 | T | 15 | 1.00 |
| 6 | 2180 | 1335 | 0 | 3 | 3518 | 0.62 | 0.38 | 0.00 | 0.00 | A | 8 | 0.62 |
| 7 | 2077 | 0 | 0 | 608 | 2685 | 0.77 | 0.00 | 0.00 | 0.23 | A | 11 | 0.77 |
| 8 | 1917 | 3 | 0 | 0 | 1920 | 1.00 | 0.00 | 0.00 | 0.00 | A | 25 | 1.00 |
| 9 | 0 | 1177 | 0 | 0 | 1177 | 0.00 | 1.00 | 0.00 | 0.00 | T | 27 | 1.00 |
| 10 | 0 | 1642 | 0 | 0 | 1642 | 0.00 | 1.00 | 0.00 | 0.00 | T | 32 | 1.00 |
| 11 | 2 | 0 | 0 | 1482 | 1484 | 0.00 | 0.00 | 0.00 | 1.00 | C | 32 | 1.00 |
| 12 | 0 | 0 | 0 | 1200 | 1200 | 0.00 | 0.00 | 0.00 | 1.00 | C | 27 | 1.00 |
| 13 | 1114 | 1 | 321 | 0 | 1436 | 0.78 | 0.00 | 0.22 | 0.00 | A | 6 | 0.78 |
| 14 | 0 | 301 | 0 | 0 | 301 | 0.00 | 1.00 | 0.00 | 0.00 | T | 6 | 1.00 |
| 15 | 968 | 0 | 0 | 321 | 1289 | 0.75 | 0.00 | 0.00 | 0.25 | A | 6 | 0.75 |
| 16 | 0 | 0 | 406 | 0 | 406 | 0.00 | 0.00 | 1.00 | 0.00 | G | 8 | 1.00 |
| 17 | 0 | 0 | 0 | 1458 | 1458 | 0.00 | 0.00 | 0.00 | 1.00 | C | 10 | 1.00 |
| 18 | 0 | 0 | 0 | 1347 | 1347 | 0.00 | 0.00 | 0.00 | 1.00 | C | 23 | 1.00 |
| 19 | 0 | 1 | 0 | 1111 | 1112 | 0.00 | 0.00 | 0.00 | 1.00 | C | 39 | 1.00 |
| 20 | 0 | 1220 | 0 | 0 | 1220 | 0.00 | 1.00 | 0.00 | 0.00 | T | 41 | 1.00 |
| 21 | 490 | 0 | 0 | 959 | 1449 | 0.34 | 0.00 | 0.00 | 0.66 | C | 28 | 0.66 |
| 22 | 0 | 572 | 0 | 1 | 573 | 0.00 | 1.00 | 0.00 | 0.00 | T | 25 | 1.00 |
| 23 | 1323 | 1 | 0 | 0 | 1324 | 1.00 | 0.00 | 0.00 | 0.00 | A | 40 | 1.00 |
| 24 | 1158 | 0 | 0 | 0 | 1158 | 1.00 | 0.00 | 0.00 | 0.00 | A | 36 | 1.00 |
| 25 | 0 | 0 | 0 | 560 | 560 | 0.00 | 0.00 | 0.00 | 1.00 | C | 31 | 1.00 |
| 26 | 248 | 0 | 0 | 733 | 981 | 0.25 | 0.00 | 0.00 | 0.75 | C | 30 | 0.75 |
| 27 | 0 | 570 | 0 | 1 | 571 | 0.00 | 1.00 | 0.00 | 0.00 | T | 33 | 1.00 |
| 28 | 0 | 251 | 0 | 0 | 251 | 0.00 | 1.00 | 0.00 | 0.00 | T | 10 | 1.00 |
| 29 | 854 | 0 | 0 | 0 | 854 | 1.00 | 0.00 | 0.00 | 0.00 | A | 25 | 1.00 |
| 30 | 888 | 0 | 0 | 170 | 1058 | 0.84 | 0.00 | 0.00 | 0.16 | A | 27 | 0.84 |
| 31 | 0 | 653 | 0 | 0 | 653 | 0.00 | 1.00 | 0.00 | 0.00 | T | 43 | 1.00 |
| 32 | 0 | 1001 | 172 | 0 | 1173 | 0.00 | 0.85 | 0.15 | 0.00 | T | 30 | 0.85 |
| 33 | 952 | 0 | 0 | 1 | 953 | 1.00 | 0.00 | 0.00 | 0.00 | A | 31 | 1.00 |
| 34 | 0 | 1 | 0 | 648 | 649 | 0.00 | 0.00 | 0.00 | 1.00 | C | 47 | 1.00 |
| 35 | 110 | 569 | 0 | 0 | 679 | 0.16 | 0.84 | 0.00 | 0.00 | T | 28 | 0.84 |
| 36 | 675 | 0 | 0 | 317 | 992 | 0.68 | 0.00 | 0.00 | 0.32 | A | 15 | 0.68 |
| 37 | 389 | 485 | 0 | 2 | 876 | 0.44 | 0.55 | 0.00 | 0.00 | T | 15 | 0.55 |
| 38 | 1013 | 2 | 0 | 1 | 1016 | 1.00 | 0.00 | 0.00 | 0.00 | A | 41 | 1.00 |
| 39 | 0 | 0 | 0 | 1266 | 1266 | 0.00 | 0.00 | 0.00 | 1.00 | C | 46 | 1.00 |
| 40 | 250 | 0 | 0 | 738 | 988 | 0.25 | 0.00 | 0.00 | 0.75 | C | 31 | 0.75 |
| 41 | 0 | 1 | 0 | 834 | 835 | 0.00 | 0.00 | 0.00 | 1.00 | C | 45 | 1.00 |
| 42 | 0 | 800 | 0 | 0 | 800 | 0.00 | 1.00 | 0.00 | 0.00 | T | 45 | 1.00 |
| 43 | 0 | 0 | 0 | 269 | 269 | 0.00 | 0.00 | 0.00 | 1.00 | C | 22 | 1.00 |
| 44 | 343 | 1144 | 0 | 0 | 1487 | 0.23 | 0.77 | 0.00 | 0.00 | T | 23 | 0.77 |
| 45 | 529 | 817 | 0 | 0 | 1346 | 0.39 | 0.61 | 0.00 | 0.00 | T | 19 | 0.61 |
| 46 | 1325 | 0 | 0 | 0 | 1325 | 1.00 | 0.00 | 0.00 | 0.00 | A | 20 | 1.00 |
| 47 | 0 | 420 | 370 | 0 | 790 | 0.00 | 0.53 | 0.47 | 0.00 | T | 6 | 0.53 |
| 48 | 540 | 574 | 0 | 0 | 1114 | 0.48 | 0.52 | 0.00 | 0.00 | T | 6 | 0.52 |
| 49 | 209 | 0 | 659 | 0 | 868 | 0.24 | 0.00 | 0.76 | 0.00 | G | 20 | 0.76 |
| 50 | 1158 | 0 | 0 | 0 | 1158 | 1.00 | 0.00 | 0.00 | 0.00 | A | 30 | 1.00 |
| 51 | 2 | 0 | 1152 | 650 | 1804 | 0.00 | 0.00 | 0.64 | 0.36 | G | 19 | 0.64 |
| 52 | 0 | 0 | 1371 | 449 | 1820 | 0.00 | 0.00 | 0.75 | 0.25 | G | 17 | 0.75 |
| 53 | 0 | 0 | 882 | 559 | 1441 | 0.00 | 0.00 | 0.61 | 0.39 | G | 11 | 0.61 |
| 54 | 0 | 693 | 0 | 560 | 1253 | 0.00 | 0.55 | 0.00 | 0.45 | T | 15 | 0.55 |
| 55 | 0 | 643 | 541 | 0 | 1184 | 0.00 | 0.54 | 0.46 | 0.00 | T | 15 | 0.54 |
| 56 | 1363 | 2 | 0 | 0 | 1365 | 1.00 | 0.00 | 0.00 | 0.00 | A | 21 | 1.00 |
| 57 | 1317 | 1 | 0 | 0 | 1318 | 1.00 | 0.00 | 0.00 | 0.00 | A | 23 | 1.00 |
| 58 | 307 | 936 | 0 | 0 | 1243 | 0.25 | 0.75 | 0.00 | 0.00 | T | 22 | 0.75 |
| 59 | 0 | 2742 | 0 | 0 | 2742 | 0.00 | 1.00 | 0.00 | 0.00 | T | 23 | 1.00 |
| 60 | 4916 | 7 | 0 | 344 | 5267 | 0.93 | 0.00 | 0.00 | 0.07 | A | 16 | 0.93 |
| 61 | 160 | 0 | 0 | 459 | 619 | 0.26 | 0.00 | 0.00 | 0.74 | C | 11 | 0.74 |
| 62 | 2 | 0 | 0 | 569 | 571 | 0.00 | 0.00 | 0.00 | 1.00 | C | 25 | 1.00 |
| 63 | 0 | 0 | 627 | 12 | 639 | 0.00 | 0.00 | 0.98 | 0.02 | G | 49 | 0.98 |
| 64 | 0 | 0 | 0 | 637 | 637 | 0.00 | 0.00 | 0.00 | 1.00 | C | 50 | 1.00 |
| 65 | 0 | 0 | 0 | 887 | 887 | 0.00 | 0.00 | 0.00 | 1.00 | C | 53 | 1.00 |
| 66 | 0 | 0 | 0 | 828 | 828 | 0.00 | 0.00 | 0.00 | 1.00 | C | 53 | 1.00 |
| 67 | 0 | 0 | 0 | 910 | 910 | 0.00 | 0.00 | 0.00 | 1.00 | C | 54 | 1.00 |
| 68 | 0 | 0 | 0 | 823 | 823 | 0.00 | 0.00 | 0.00 | 1.00 | C | 55 | 1.00 |
| 69 | 0 | 0 | 0 | 708 | 708 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 70 | 0 | 0 | 736 | 0 | 736 | 0.00 | 0.00 | 1.00 | 0.00 | G | 58 | 1.00 |
| 71 | 0 | 412 | 0 | 0 | 412 | 0.00 | 1.00 | 0.00 | 0.00 | T | 41 | 1.00 |
| 72 | 653 | 0 | 0 | 0 | 653 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 73 | 1 | 0 | 0 | 737 | 738 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 74 | 0 | 0 | 0 | 691 | 691 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 75 | 0 | 0 | 820 | 25 | 845 | 0.00 | 0.00 | 0.97 | 0.03 | G | 58 | 0.97 |
| 76 | 0 | 0 | 0 | 542 | 542 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 77 | 0 | 625 | 0 | 1 | 626 | 0.00 | 1.00 | 0.00 | 0.00 | T | 51 | 1.00 |
| 78 | 609 | 0 | 0 | 0 | 609 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 79 | 701 | 0 | 0 | 0 | 701 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 80 | 0 | 585 | 0 | 0 | 585 | 0.00 | 1.00 | 0.00 | 0.00 | T | 61 | 1.00 |
| 81 | 0 | 831 | 0 | 0 | 831 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 82 | 747 | 1 | 0 | 0 | 748 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 83 | 508 | 0 | 0 | 0 | 508 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 84 | 1 | 0 | 0 | 497 | 498 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 85 | 3 | 600 | 0 | 0 | 603 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 86 | 745 | 1 | 0 | 0 | 746 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 87 | 572 | 0 | 0 | 0 | 572 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 88 | 560 | 0 | 0 | 0 | 560 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 89 | 369 | 0 | 0 | 0 | 369 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 90 | 610 | 0 | 0 | 0 | 610 | 1.00 | 0.00 | 0.00 | 0.00 | A | 41 | 1.00 |
| 91 | 1 | 683 | 0 | 0 | 684 | 0.00 | 1.00 | 0.00 | 0.00 | T | 51 | 1.00 |
| 92 | 0 | 865 | 0 | 2 | 867 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 93 | 1 | 2 | 0 | 737 | 740 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 94 | 401 | 0 | 0 | 18 | 419 | 0.96 | 0.00 | 0.00 | 0.04 | A | 58 | 0.96 |
| 95 | 0 | 0 | 0 | 621 | 621 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 96 | 0 | 3 | 0 | 737 | 740 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 97 | 2 | 679 | 0 | 3 | 684 | 0.00 | 0.99 | 0.00 | 0.00 | T | 58 | 0.99 |
| 98 | 816 | 1 | 0 | 2 | 819 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 99 | 2 | 0 | 0 | 659 | 661 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 100 | 0 | 0 | 5 | 625 | 630 | 0.00 | 0.00 | 0.01 | 0.99 | C | 46 | 0.99 |
| 101 | 3 | 0 | 807 | 3 | 813 | 0.00 | 0.00 | 0.99 | 0.00 | G | 46 | 0.99 |
| 102 | 959 | 0 | 2 | 0 | 961 | 1.00 | 0.00 | 0.00 | 0.00 | A | 46 | 1.00 |
| 103 | 1 | 0 | 0 | 671 | 672 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 104 | 1 | 0 | 0 | 650 | 651 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 105 | 274 | 0 | 0 | 8 | 282 | 0.97 | 0.00 | 0.00 | 0.03 | A | 58 | 0.97 |
| 106 | 3 | 0 | 0 | 603 | 606 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 107 | 494 | 0 | 0 | 2 | 496 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 108 | 541 | 0 | 0 | 2 | 543 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 109 | 0 | 0 | 0 | 636 | 636 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 110 | 1 | 0 | 0 | 677 | 678 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 111 | 561 | 0 | 0 | 0 | 561 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 112 | 579 | 7 | 0 | 0 | 586 | 0.99 | 0.01 | 0.00 | 0.00 | A | 58 | 0.99 |
| 113 | 2 | 545 | 0 | 0 | 547 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 114 | 2 | 0 | 0 | 789 | 791 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 115 | 522 | 0 | 0 | 2 | 524 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 116 | 502 | 0 | 0 | 2 | 504 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 117 | 16 | 0 | 0 | 505 | 521 | 0.03 | 0.00 | 0.00 | 0.97 | C | 58 | 0.97 |
| 118 | 582 | 0 | 0 | 2 | 584 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 119 | 526 | 0 | 0 | 2 | 528 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 120 | 2 | 0 | 9 | 577 | 588 | 0.00 | 0.00 | 0.02 | 0.98 | C | 51 | 0.98 |
| 121 | 0 | 0 | 658 | 13 | 671 | 0.00 | 0.00 | 0.98 | 0.02 | G | 51 | 0.98 |
| 122 | 0 | 0 | 24 | 626 | 650 | 0.00 | 0.00 | 0.04 | 0.96 | C | 58 | 0.96 |
| 123 | 8 | 0 | 315 | 0 | 323 | 0.02 | 0.00 | 0.98 | 0.00 | G | 51 | 0.98 |
| 124 | 731 | 0 | 1 | 0 | 732 | 1.00 | 0.00 | 0.00 | 0.00 | A | 41 | 1.00 |
| 125 | 900 | 0 | 0 | 0 | 900 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 126 | 0 | 0 | 0 | 731 | 731 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 127 | 0 | 0 | 0 | 989 | 989 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 128 | 0 | 0 | 0 | 987 | 987 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 129 | 0 | 21 | 0 | 814 | 835 | 0.00 | 0.03 | 0.00 | 0.97 | C | 58 | 0.97 |
| 130 | 0 | 781 | 0 | 37 | 818 | 0.00 | 0.95 | 0.00 | 0.05 | T | 58 | 0.95 |
| 131 | 0 | 0 | 0 | 1065 | 1065 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 132 | 0 | 0 | 0 | 892 | 892 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 133 | 0 | 0 | 0 | 838 | 838 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 134 | 0 | 0 | 0 | 696 | 696 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 135 | 582 | 0 | 0 | 3 | 585 | 0.99 | 0.00 | 0.00 | 0.01 | A | 58 | 0.99 |
| 136 | 618 | 0 | 0 | 0 | 618 | 1.00 | 0.00 | 0.00 | 0.00 | A | 61 | 1.00 |
| 137 | 758 | 0 | 0 | 0 | 758 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 138 | 716 | 0 | 0 | 0 | 716 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 139 | 0 | 0 | 2 | 528 | 530 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 140 | 154 | 0 | 522 | 0 | 676 | 0.23 | 0.00 | 0.77 | 0.00 | G | 34 | 0.77 |
| 141 | 712 | 0 | 0 | 0 | 712 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 142 | 873 | 0 | 0 | 0 | 873 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 143 | 595 | 0 | 0 | 2 | 597 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 144 | 1 | 13 | 0 | 577 | 591 | 0.00 | 0.02 | 0.00 | 0.98 | C | 58 | 0.98 |
| 145 | 13 | 656 | 0 | 2 | 671 | 0.02 | 0.98 | 0.00 | 0.00 | T | 58 | 0.98 |
| 146 | 856 | 2 | 0 | 0 | 858 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 147 | 688 | 0 | 0 | 0 | 688 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 148 | 0 | 0 | 30 | 579 | 609 | 0.00 | 0.00 | 0.05 | 0.95 | C | 58 | 0.95 |
| 149 | 31 | 0 | 694 | 2 | 727 | 0.04 | 0.00 | 0.95 | 0.00 | G | 58 | 0.95 |
| 150 | 795 | 0 | 2 | 7 | 804 | 0.99 | 0.00 | 0.00 | 0.01 | A | 58 | 0.99 |
| 151 | 0 | 0 | 0 | 751 | 751 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 152 | 0 | 0 | 0 | 911 | 911 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 153 | 0 | 0 | 0 | 873 | 873 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 154 | 0 | 0 | 740 | 30 | 770 | 0.00 | 0.00 | 0.96 | 0.04 | G | 58 | 0.96 |
| 155 | 0 | 0 | 2 | 715 | 717 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 156 | 0 | 0 | 0 | 1039 | 1039 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 157 | 0 | 0 | 0 | 830 | 830 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 158 | 574 | 0 | 0 | 38 | 612 | 0.94 | 0.00 | 0.00 | 0.06 | A | 51 | 0.94 |
| 159 | 2 | 0 | 0 | 826 | 828 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 160 | 0 | 0 | 0 | 871 | 871 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 161 | 0 | 0 | 2 | 837 | 839 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 162 | 136 | 0 | 681 | 3 | 820 | 0.17 | 0.00 | 0.83 | 0.00 | G | 32 | 0.83 |
| 163 | 1078 | 0 | 0 | 3 | 1081 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 164 | 1 | 0 | 0 | 725 | 726 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 165 | 0 | 11 | 0 | 849 | 860 | 0.00 | 0.01 | 0.00 | 0.99 | C | 58 | 0.99 |
| 166 | 0 | 694 | 0 | 47 | 741 | 0.00 | 0.94 | 0.00 | 0.06 | T | 51 | 0.94 |
| 167 | 0 | 0 | 0 | 1006 | 1006 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 168 | 0 | 0 | 498 | 37 | 535 | 0.00 | 0.00 | 0.93 | 0.07 | G | 51 | 0.93 |
| 169 | 8 | 0 | 0 | 510 | 518 | 0.02 | 0.00 | 0.00 | 0.98 | C | 51 | 0.98 |
| 170 | 587 | 17 | 0 | 0 | 604 | 0.97 | 0.03 | 0.00 | 0.00 | A | 58 | 0.97 |
| 171 | 47 | 578 | 0 | 0 | 625 | 0.08 | 0.92 | 0.00 | 0.00 | T | 58 | 0.92 |
| 172 | 895 | 0 | 0 | 0 | 895 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 173 | 679 | 0 | 0 | 0 | 679 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 174 | 477 | 0 | 0 | 1 | 478 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 175 | 0 | 0 | 7 | 628 | 635 | 0.00 | 0.00 | 0.01 | 0.99 | C | 51 | 0.99 |
| 176 | 0 | 0 | 588 | 30 | 618 | 0.00 | 0.00 | 0.95 | 0.05 | G | 58 | 0.95 |
| 177 | 0 | 0 | 27 | 706 | 733 | 0.00 | 0.00 | 0.04 | 0.96 | C | 58 | 0.96 |
| 178 | 127 | 0 | 557 | 0 | 684 | 0.19 | 0.00 | 0.81 | 0.00 | G | 32 | 0.81 |
| 179 | 748 | 2 | 2 | 0 | 752 | 0.99 | 0.00 | 0.00 | 0.00 | A | 51 | 0.99 |
| 180 | 50 | 515 | 0 | 0 | 565 | 0.09 | 0.91 | 0.00 | 0.00 | T | 58 | 0.91 |
| 181 | 824 | 0 | 0 | 0 | 824 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 182 | 629 | 0 | 0 | 0 | 629 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 183 | 2 | 0 | 0 | 814 | 816 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 184 | 0 | 0 | 0 | 985 | 985 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 185 | 0 | 11 | 0 | 810 | 821 | 0.00 | 0.01 | 0.00 | 0.99 | C | 58 | 0.99 |
| 186 | 0 | 723 | 0 | 57 | 780 | 0.00 | 0.93 | 0.00 | 0.07 | T | 58 | 0.93 |
| 187 | 0 | 19 | 0 | 898 | 917 | 0.00 | 0.02 | 0.00 | 0.98 | C | 58 | 0.98 |
| 188 | 6 | 545 | 0 | 2 | 553 | 0.01 | 0.99 | 0.00 | 0.00 | T | 34 | 0.99 |
| 189 | 863 | 0 | 0 | 0 | 863 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 190 | 615 | 0 | 0 | 2 | 617 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 191 | 0 | 0 | 0 | 675 | 675 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 192 | 0 | 3 | 0 | 768 | 771 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 193 | 95 | 542 | 0 | 2 | 639 | 0.15 | 0.85 | 0.00 | 0.00 | T | 34 | 0.85 |
| 194 | 846 | 0 | 0 | 0 | 846 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 195 | 610 | 0 | 0 | 0 | 610 | 1.00 | 0.00 | 0.00 | 0.00 | A | 61 | 1.00 |
| 196 | 603 | 0 | 0 | 0 | 603 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 197 | 668 | 9 | 0 | 0 | 677 | 0.99 | 0.01 | 0.00 | 0.00 | A | 58 | 0.99 |
| 198 | 3 | 750 | 0 | 0 | 753 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 199 | 14 | 853 | 0 | 0 | 867 | 0.02 | 0.98 | 0.00 | 0.00 | T | 58 | 0.98 |
| 200 | 819 | 3 | 0 | 2 | 824 | 0.99 | 0.00 | 0.00 | 0.00 | A | 58 | 0.99 |
| 201 | 3 | 3 | 0 | 654 | 660 | 0.00 | 0.00 | 0.00 | 0.99 | C | 58 | 0.99 |
| 202 | 137 | 514 | 0 | 0 | 651 | 0.21 | 0.79 | 0.00 | 0.00 | T | 34 | 0.79 |
| 203 | 877 | 2 | 0 | 0 | 879 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 204 | 620 | 0 | 0 | 0 | 620 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 205 | 467 | 0 | 0 | 100 | 567 | 0.82 | 0.00 | 0.00 | 0.18 | A | 34 | 0.82 |
| 206 | 2 | 0 | 0 | 700 | 702 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 207 | 0 | 0 | 0 | 883 | 883 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 208 | 0 | 25 | 0 | 748 | 773 | 0.00 | 0.03 | 0.00 | 0.97 | C | 58 | 0.97 |
| 209 | 0 | 804 | 0 | 0 | 804 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 210 | 0 | 1014 | 0 | 0 | 1014 | 0.00 | 1.00 | 0.00 | 0.00 | T | 51 | 1.00 |
| 211 | 186 | 717 | 0 | 0 | 903 | 0.21 | 0.79 | 0.00 | 0.00 | T | 32 | 0.79 |
| 212 | 747 | 2 | 0 | 0 | 749 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 213 | 7 | 120 | 536 | 0 | 663 | 0.01 | 0.18 | 0.81 | 0.00 | G | 29 | 0.81 |
| 214 | 0 | 446 | 321 | 0 | 767 | 0.00 | 0.58 | 0.42 | 0.00 | T | 25 | 0.58 |
| 215 | 30 | 0 | 530 | 0 | 560 | 0.05 | 0.00 | 0.95 | 0.00 | G | 41 | 0.95 |
| 216 | 600 | 0 | 292 | 0 | 892 | 0.67 | 0.00 | 0.33 | 0.00 | A | 25 | 0.67 |
| 217 | 1 | 0 | 799 | 0 | 800 | 0.00 | 0.00 | 1.00 | 0.00 | G | 46 | 1.00 |
| 218 | 0 | 0 | 1115 | 0 | 1115 | 0.00 | 0.00 | 1.00 | 0.00 | G | 51 | 1.00 |
| 219 | 0 | 3 | 758 | 0 | 761 | 0.00 | 0.00 | 1.00 | 0.00 | G | 51 | 1.00 |
| 220 | 0 | 620 | 0 | 0 | 620 | 0.00 | 1.00 | 0.00 | 0.00 | T | 50 | 1.00 |
| 221 | 203 | 599 | 0 | 0 | 802 | 0.25 | 0.75 | 0.00 | 0.00 | T | 31 | 0.75 |
| 222 | 896 | 2 | 0 | 0 | 898 | 1.00 | 0.00 | 0.00 | 0.00 | A | 47 | 1.00 |
| 223 | 767 | 179 | 0 | 0 | 946 | 0.81 | 0.19 | 0.00 | 0.00 | A | 29 | 0.81 |
| 224 | 46 | 1015 | 0 | 0 | 1061 | 0.04 | 0.96 | 0.00 | 0.00 | T | 23 | 0.96 |
| 225 | 862 | 2072 | 0 | 0 | 2934 | 0.29 | 0.71 | 0.00 | 0.00 | T | 23 | 0.71 |
| 226 | 4043 | 9 | 0 | 0 | 4052 | 1.00 | 0.00 | 0.00 | 0.00 | A | 20 | 1.00 |
| 227 | 397 | 0 | 0 | 0 | 397 | 1.00 | 0.00 | 0.00 | 0.00 | A | 30 | 1.00 |
| 228 | 0 | 0 | 3 | 5 | 8 | 0.00 | 0.00 | 0.38 | 0.62 | C | 10 | 0.62 |
| 229 | 0 | 0 | 2 | 5 | 7 | 0.00 | 0.00 | 0.29 | 0.71 | C | 8 | 0.71 |
Trimming thresholds :
| Raw sequence information | Values |
|---|---|
| Raw sequence length : | 229 bp |
| Mean of raw sequence Phred quality scores : | 44.29 |
| Quality report - Trimmed sequence information | Values |
|---|---|
| Trimmed sequence length : | 212 bp |
| Trimmed sequence start position : | 10 |
| Trimmed sequence end position : | 222 |
| Mean of trimmed sequence Phred quality scores : | 46.45 |
Trimming thresholds :
| Raw sequence information | Values |
|---|---|
| Raw sequence length : | 229 bp |
| Mean of raw sequence primary peak ratios : | 0.94 |
| Percentage of non-mixed positions on raw sequence : | 91.27 % |
| Mixed peak report - Trimmed sequence information | Values |
|---|---|
| Trimmed sequence length : | 218 bp |
| Trimmed sequence start position : | 7 |
| Trimmed sequence end position : | 224 |
| Mean of trimmed sequence primary peak ratios : | 0.95 |
| Percentage of non-mixed positions on trimmed sequence : | 94.04 % |
| Final trimmed sequence information | Values |
|---|---|
| Length : | 213 bp |
| Start position : | 10 |
| End position : | 222 |
| Mean of Phred quality scores : | 46.38 |
| Mean of primary peak ratio : | 0.95 |
| Percentage of non-mixed positions : | 93.9 % |
Sequence of primary peaks:
## TCCATAGCCCTCTAACCTTAATTACTATACCCTCTTATTGAGGGTTAATTACCGCCCCCCGTACCGCTAATTAACTAAAAATTCACCTACCGACCACAACCAATCAACAACGCGAACCCCTCCCCAAAACGAAACTAACGACCCGCCCACCCGACCTCGCATAAACGCGATAACCCTCTAACCTAAAATTACTAAACCCTTTAGTGAGGGTTA
Open chromatogram file in a new tab
| Position | A peak | T peak | G peak | C peak | Total | A ratio | T ratio | G ratio | C ratio | Primary base | Quality score | Primary ratio |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10 | 0 | 1642 | 0 | 0 | 1642 | 0.00 | 1.00 | 0.00 | 0.00 | T | 32 | 1.00 |
| 11 | 2 | 0 | 0 | 1482 | 1484 | 0.00 | 0.00 | 0.00 | 1.00 | C | 32 | 1.00 |
| 12 | 0 | 0 | 0 | 1200 | 1200 | 0.00 | 0.00 | 0.00 | 1.00 | C | 27 | 1.00 |
| 13 | 1114 | 1 | 321 | 0 | 1436 | 0.78 | 0.00 | 0.22 | 0.00 | A | 6 | 0.78 |
| 14 | 0 | 301 | 0 | 0 | 301 | 0.00 | 1.00 | 0.00 | 0.00 | T | 6 | 1.00 |
| 15 | 968 | 0 | 0 | 321 | 1289 | 0.75 | 0.00 | 0.00 | 0.25 | A | 6 | 0.75 |
| 16 | 0 | 0 | 406 | 0 | 406 | 0.00 | 0.00 | 1.00 | 0.00 | G | 8 | 1.00 |
| 17 | 0 | 0 | 0 | 1458 | 1458 | 0.00 | 0.00 | 0.00 | 1.00 | C | 10 | 1.00 |
| 18 | 0 | 0 | 0 | 1347 | 1347 | 0.00 | 0.00 | 0.00 | 1.00 | C | 23 | 1.00 |
| 19 | 0 | 1 | 0 | 1111 | 1112 | 0.00 | 0.00 | 0.00 | 1.00 | C | 39 | 1.00 |
| 20 | 0 | 1220 | 0 | 0 | 1220 | 0.00 | 1.00 | 0.00 | 0.00 | T | 41 | 1.00 |
| 21 | 490 | 0 | 0 | 959 | 1449 | 0.34 | 0.00 | 0.00 | 0.66 | C | 28 | 0.66 |
| 22 | 0 | 572 | 0 | 1 | 573 | 0.00 | 1.00 | 0.00 | 0.00 | T | 25 | 1.00 |
| 23 | 1323 | 1 | 0 | 0 | 1324 | 1.00 | 0.00 | 0.00 | 0.00 | A | 40 | 1.00 |
| 24 | 1158 | 0 | 0 | 0 | 1158 | 1.00 | 0.00 | 0.00 | 0.00 | A | 36 | 1.00 |
| 25 | 0 | 0 | 0 | 560 | 560 | 0.00 | 0.00 | 0.00 | 1.00 | C | 31 | 1.00 |
| 26 | 248 | 0 | 0 | 733 | 981 | 0.25 | 0.00 | 0.00 | 0.75 | C | 30 | 0.75 |
| 27 | 0 | 570 | 0 | 1 | 571 | 0.00 | 1.00 | 0.00 | 0.00 | T | 33 | 1.00 |
| 28 | 0 | 251 | 0 | 0 | 251 | 0.00 | 1.00 | 0.00 | 0.00 | T | 10 | 1.00 |
| 29 | 854 | 0 | 0 | 0 | 854 | 1.00 | 0.00 | 0.00 | 0.00 | A | 25 | 1.00 |
| 30 | 888 | 0 | 0 | 170 | 1058 | 0.84 | 0.00 | 0.00 | 0.16 | A | 27 | 0.84 |
| 31 | 0 | 653 | 0 | 0 | 653 | 0.00 | 1.00 | 0.00 | 0.00 | T | 43 | 1.00 |
| 32 | 0 | 1001 | 172 | 0 | 1173 | 0.00 | 0.85 | 0.15 | 0.00 | T | 30 | 0.85 |
| 33 | 952 | 0 | 0 | 1 | 953 | 1.00 | 0.00 | 0.00 | 0.00 | A | 31 | 1.00 |
| 34 | 0 | 1 | 0 | 648 | 649 | 0.00 | 0.00 | 0.00 | 1.00 | C | 47 | 1.00 |
| 35 | 110 | 569 | 0 | 0 | 679 | 0.16 | 0.84 | 0.00 | 0.00 | T | 28 | 0.84 |
| 36 | 675 | 0 | 0 | 317 | 992 | 0.68 | 0.00 | 0.00 | 0.32 | A | 15 | 0.68 |
| 37 | 389 | 485 | 0 | 2 | 876 | 0.44 | 0.55 | 0.00 | 0.00 | T | 15 | 0.55 |
| 38 | 1013 | 2 | 0 | 1 | 1016 | 1.00 | 0.00 | 0.00 | 0.00 | A | 41 | 1.00 |
| 39 | 0 | 0 | 0 | 1266 | 1266 | 0.00 | 0.00 | 0.00 | 1.00 | C | 46 | 1.00 |
| 40 | 250 | 0 | 0 | 738 | 988 | 0.25 | 0.00 | 0.00 | 0.75 | C | 31 | 0.75 |
| 41 | 0 | 1 | 0 | 834 | 835 | 0.00 | 0.00 | 0.00 | 1.00 | C | 45 | 1.00 |
| 42 | 0 | 800 | 0 | 0 | 800 | 0.00 | 1.00 | 0.00 | 0.00 | T | 45 | 1.00 |
| 43 | 0 | 0 | 0 | 269 | 269 | 0.00 | 0.00 | 0.00 | 1.00 | C | 22 | 1.00 |
| 44 | 343 | 1144 | 0 | 0 | 1487 | 0.23 | 0.77 | 0.00 | 0.00 | T | 23 | 0.77 |
| 45 | 529 | 817 | 0 | 0 | 1346 | 0.39 | 0.61 | 0.00 | 0.00 | T | 19 | 0.61 |
| 46 | 1325 | 0 | 0 | 0 | 1325 | 1.00 | 0.00 | 0.00 | 0.00 | A | 20 | 1.00 |
| 47 | 0 | 420 | 370 | 0 | 790 | 0.00 | 0.53 | 0.47 | 0.00 | T | 6 | 0.53 |
| 48 | 540 | 574 | 0 | 0 | 1114 | 0.48 | 0.52 | 0.00 | 0.00 | T | 6 | 0.52 |
| 49 | 209 | 0 | 659 | 0 | 868 | 0.24 | 0.00 | 0.76 | 0.00 | G | 20 | 0.76 |
| 50 | 1158 | 0 | 0 | 0 | 1158 | 1.00 | 0.00 | 0.00 | 0.00 | A | 30 | 1.00 |
| 51 | 2 | 0 | 1152 | 650 | 1804 | 0.00 | 0.00 | 0.64 | 0.36 | G | 19 | 0.64 |
| 52 | 0 | 0 | 1371 | 449 | 1820 | 0.00 | 0.00 | 0.75 | 0.25 | G | 17 | 0.75 |
| 53 | 0 | 0 | 882 | 559 | 1441 | 0.00 | 0.00 | 0.61 | 0.39 | G | 11 | 0.61 |
| 54 | 0 | 693 | 0 | 560 | 1253 | 0.00 | 0.55 | 0.00 | 0.45 | T | 15 | 0.55 |
| 55 | 0 | 643 | 541 | 0 | 1184 | 0.00 | 0.54 | 0.46 | 0.00 | T | 15 | 0.54 |
| 56 | 1363 | 2 | 0 | 0 | 1365 | 1.00 | 0.00 | 0.00 | 0.00 | A | 21 | 1.00 |
| 57 | 1317 | 1 | 0 | 0 | 1318 | 1.00 | 0.00 | 0.00 | 0.00 | A | 23 | 1.00 |
| 58 | 307 | 936 | 0 | 0 | 1243 | 0.25 | 0.75 | 0.00 | 0.00 | T | 22 | 0.75 |
| 59 | 0 | 2742 | 0 | 0 | 2742 | 0.00 | 1.00 | 0.00 | 0.00 | T | 23 | 1.00 |
| 60 | 4916 | 7 | 0 | 344 | 5267 | 0.93 | 0.00 | 0.00 | 0.07 | A | 16 | 0.93 |
| 61 | 160 | 0 | 0 | 459 | 619 | 0.26 | 0.00 | 0.00 | 0.74 | C | 11 | 0.74 |
| 62 | 2 | 0 | 0 | 569 | 571 | 0.00 | 0.00 | 0.00 | 1.00 | C | 25 | 1.00 |
| 63 | 0 | 0 | 627 | 12 | 639 | 0.00 | 0.00 | 0.98 | 0.02 | G | 49 | 0.98 |
| 64 | 0 | 0 | 0 | 637 | 637 | 0.00 | 0.00 | 0.00 | 1.00 | C | 50 | 1.00 |
| 65 | 0 | 0 | 0 | 887 | 887 | 0.00 | 0.00 | 0.00 | 1.00 | C | 53 | 1.00 |
| 66 | 0 | 0 | 0 | 828 | 828 | 0.00 | 0.00 | 0.00 | 1.00 | C | 53 | 1.00 |
| 67 | 0 | 0 | 0 | 910 | 910 | 0.00 | 0.00 | 0.00 | 1.00 | C | 54 | 1.00 |
| 68 | 0 | 0 | 0 | 823 | 823 | 0.00 | 0.00 | 0.00 | 1.00 | C | 55 | 1.00 |
| 69 | 0 | 0 | 0 | 708 | 708 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 70 | 0 | 0 | 736 | 0 | 736 | 0.00 | 0.00 | 1.00 | 0.00 | G | 58 | 1.00 |
| 71 | 0 | 412 | 0 | 0 | 412 | 0.00 | 1.00 | 0.00 | 0.00 | T | 41 | 1.00 |
| 72 | 653 | 0 | 0 | 0 | 653 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 73 | 1 | 0 | 0 | 737 | 738 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 74 | 0 | 0 | 0 | 691 | 691 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 75 | 0 | 0 | 820 | 25 | 845 | 0.00 | 0.00 | 0.97 | 0.03 | G | 58 | 0.97 |
| 76 | 0 | 0 | 0 | 542 | 542 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 77 | 0 | 625 | 0 | 1 | 626 | 0.00 | 1.00 | 0.00 | 0.00 | T | 51 | 1.00 |
| 78 | 609 | 0 | 0 | 0 | 609 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 79 | 701 | 0 | 0 | 0 | 701 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 80 | 0 | 585 | 0 | 0 | 585 | 0.00 | 1.00 | 0.00 | 0.00 | T | 61 | 1.00 |
| 81 | 0 | 831 | 0 | 0 | 831 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 82 | 747 | 1 | 0 | 0 | 748 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 83 | 508 | 0 | 0 | 0 | 508 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 84 | 1 | 0 | 0 | 497 | 498 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 85 | 3 | 600 | 0 | 0 | 603 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 86 | 745 | 1 | 0 | 0 | 746 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 87 | 572 | 0 | 0 | 0 | 572 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 88 | 560 | 0 | 0 | 0 | 560 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 89 | 369 | 0 | 0 | 0 | 369 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 90 | 610 | 0 | 0 | 0 | 610 | 1.00 | 0.00 | 0.00 | 0.00 | A | 41 | 1.00 |
| 91 | 1 | 683 | 0 | 0 | 684 | 0.00 | 1.00 | 0.00 | 0.00 | T | 51 | 1.00 |
| 92 | 0 | 865 | 0 | 2 | 867 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 93 | 1 | 2 | 0 | 737 | 740 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 94 | 401 | 0 | 0 | 18 | 419 | 0.96 | 0.00 | 0.00 | 0.04 | A | 58 | 0.96 |
| 95 | 0 | 0 | 0 | 621 | 621 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 96 | 0 | 3 | 0 | 737 | 740 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 97 | 2 | 679 | 0 | 3 | 684 | 0.00 | 0.99 | 0.00 | 0.00 | T | 58 | 0.99 |
| 98 | 816 | 1 | 0 | 2 | 819 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 99 | 2 | 0 | 0 | 659 | 661 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 100 | 0 | 0 | 5 | 625 | 630 | 0.00 | 0.00 | 0.01 | 0.99 | C | 46 | 0.99 |
| 101 | 3 | 0 | 807 | 3 | 813 | 0.00 | 0.00 | 0.99 | 0.00 | G | 46 | 0.99 |
| 102 | 959 | 0 | 2 | 0 | 961 | 1.00 | 0.00 | 0.00 | 0.00 | A | 46 | 1.00 |
| 103 | 1 | 0 | 0 | 671 | 672 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 104 | 1 | 0 | 0 | 650 | 651 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 105 | 274 | 0 | 0 | 8 | 282 | 0.97 | 0.00 | 0.00 | 0.03 | A | 58 | 0.97 |
| 106 | 3 | 0 | 0 | 603 | 606 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 107 | 494 | 0 | 0 | 2 | 496 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 108 | 541 | 0 | 0 | 2 | 543 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 109 | 0 | 0 | 0 | 636 | 636 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 110 | 1 | 0 | 0 | 677 | 678 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 111 | 561 | 0 | 0 | 0 | 561 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 112 | 579 | 7 | 0 | 0 | 586 | 0.99 | 0.01 | 0.00 | 0.00 | A | 58 | 0.99 |
| 113 | 2 | 545 | 0 | 0 | 547 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 114 | 2 | 0 | 0 | 789 | 791 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 115 | 522 | 0 | 0 | 2 | 524 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 116 | 502 | 0 | 0 | 2 | 504 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 117 | 16 | 0 | 0 | 505 | 521 | 0.03 | 0.00 | 0.00 | 0.97 | C | 58 | 0.97 |
| 118 | 582 | 0 | 0 | 2 | 584 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 119 | 526 | 0 | 0 | 2 | 528 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 120 | 2 | 0 | 9 | 577 | 588 | 0.00 | 0.00 | 0.02 | 0.98 | C | 51 | 0.98 |
| 121 | 0 | 0 | 658 | 13 | 671 | 0.00 | 0.00 | 0.98 | 0.02 | G | 51 | 0.98 |
| 122 | 0 | 0 | 24 | 626 | 650 | 0.00 | 0.00 | 0.04 | 0.96 | C | 58 | 0.96 |
| 123 | 8 | 0 | 315 | 0 | 323 | 0.02 | 0.00 | 0.98 | 0.00 | G | 51 | 0.98 |
| 124 | 731 | 0 | 1 | 0 | 732 | 1.00 | 0.00 | 0.00 | 0.00 | A | 41 | 1.00 |
| 125 | 900 | 0 | 0 | 0 | 900 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 126 | 0 | 0 | 0 | 731 | 731 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 127 | 0 | 0 | 0 | 989 | 989 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 128 | 0 | 0 | 0 | 987 | 987 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 129 | 0 | 21 | 0 | 814 | 835 | 0.00 | 0.03 | 0.00 | 0.97 | C | 58 | 0.97 |
| 130 | 0 | 781 | 0 | 37 | 818 | 0.00 | 0.95 | 0.00 | 0.05 | T | 58 | 0.95 |
| 131 | 0 | 0 | 0 | 1065 | 1065 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 132 | 0 | 0 | 0 | 892 | 892 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 133 | 0 | 0 | 0 | 838 | 838 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 134 | 0 | 0 | 0 | 696 | 696 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 135 | 582 | 0 | 0 | 3 | 585 | 0.99 | 0.00 | 0.00 | 0.01 | A | 58 | 0.99 |
| 136 | 618 | 0 | 0 | 0 | 618 | 1.00 | 0.00 | 0.00 | 0.00 | A | 61 | 1.00 |
| 137 | 758 | 0 | 0 | 0 | 758 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 138 | 716 | 0 | 0 | 0 | 716 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 139 | 0 | 0 | 2 | 528 | 530 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 140 | 154 | 0 | 522 | 0 | 676 | 0.23 | 0.00 | 0.77 | 0.00 | G | 34 | 0.77 |
| 141 | 712 | 0 | 0 | 0 | 712 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 142 | 873 | 0 | 0 | 0 | 873 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 143 | 595 | 0 | 0 | 2 | 597 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 144 | 1 | 13 | 0 | 577 | 591 | 0.00 | 0.02 | 0.00 | 0.98 | C | 58 | 0.98 |
| 145 | 13 | 656 | 0 | 2 | 671 | 0.02 | 0.98 | 0.00 | 0.00 | T | 58 | 0.98 |
| 146 | 856 | 2 | 0 | 0 | 858 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 147 | 688 | 0 | 0 | 0 | 688 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 148 | 0 | 0 | 30 | 579 | 609 | 0.00 | 0.00 | 0.05 | 0.95 | C | 58 | 0.95 |
| 149 | 31 | 0 | 694 | 2 | 727 | 0.04 | 0.00 | 0.95 | 0.00 | G | 58 | 0.95 |
| 150 | 795 | 0 | 2 | 7 | 804 | 0.99 | 0.00 | 0.00 | 0.01 | A | 58 | 0.99 |
| 151 | 0 | 0 | 0 | 751 | 751 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 152 | 0 | 0 | 0 | 911 | 911 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 153 | 0 | 0 | 0 | 873 | 873 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 154 | 0 | 0 | 740 | 30 | 770 | 0.00 | 0.00 | 0.96 | 0.04 | G | 58 | 0.96 |
| 155 | 0 | 0 | 2 | 715 | 717 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 156 | 0 | 0 | 0 | 1039 | 1039 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 157 | 0 | 0 | 0 | 830 | 830 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 158 | 574 | 0 | 0 | 38 | 612 | 0.94 | 0.00 | 0.00 | 0.06 | A | 51 | 0.94 |
| 159 | 2 | 0 | 0 | 826 | 828 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 160 | 0 | 0 | 0 | 871 | 871 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 161 | 0 | 0 | 2 | 837 | 839 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 162 | 136 | 0 | 681 | 3 | 820 | 0.17 | 0.00 | 0.83 | 0.00 | G | 32 | 0.83 |
| 163 | 1078 | 0 | 0 | 3 | 1081 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 164 | 1 | 0 | 0 | 725 | 726 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 165 | 0 | 11 | 0 | 849 | 860 | 0.00 | 0.01 | 0.00 | 0.99 | C | 58 | 0.99 |
| 166 | 0 | 694 | 0 | 47 | 741 | 0.00 | 0.94 | 0.00 | 0.06 | T | 51 | 0.94 |
| 167 | 0 | 0 | 0 | 1006 | 1006 | 0.00 | 0.00 | 0.00 | 1.00 | C | 51 | 1.00 |
| 168 | 0 | 0 | 498 | 37 | 535 | 0.00 | 0.00 | 0.93 | 0.07 | G | 51 | 0.93 |
| 169 | 8 | 0 | 0 | 510 | 518 | 0.02 | 0.00 | 0.00 | 0.98 | C | 51 | 0.98 |
| 170 | 587 | 17 | 0 | 0 | 604 | 0.97 | 0.03 | 0.00 | 0.00 | A | 58 | 0.97 |
| 171 | 47 | 578 | 0 | 0 | 625 | 0.08 | 0.92 | 0.00 | 0.00 | T | 58 | 0.92 |
| 172 | 895 | 0 | 0 | 0 | 895 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 173 | 679 | 0 | 0 | 0 | 679 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 174 | 477 | 0 | 0 | 1 | 478 | 1.00 | 0.00 | 0.00 | 0.00 | A | 51 | 1.00 |
| 175 | 0 | 0 | 7 | 628 | 635 | 0.00 | 0.00 | 0.01 | 0.99 | C | 51 | 0.99 |
| 176 | 0 | 0 | 588 | 30 | 618 | 0.00 | 0.00 | 0.95 | 0.05 | G | 58 | 0.95 |
| 177 | 0 | 0 | 27 | 706 | 733 | 0.00 | 0.00 | 0.04 | 0.96 | C | 58 | 0.96 |
| 178 | 127 | 0 | 557 | 0 | 684 | 0.19 | 0.00 | 0.81 | 0.00 | G | 32 | 0.81 |
| 179 | 748 | 2 | 2 | 0 | 752 | 0.99 | 0.00 | 0.00 | 0.00 | A | 51 | 0.99 |
| 180 | 50 | 515 | 0 | 0 | 565 | 0.09 | 0.91 | 0.00 | 0.00 | T | 58 | 0.91 |
| 181 | 824 | 0 | 0 | 0 | 824 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 182 | 629 | 0 | 0 | 0 | 629 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 183 | 2 | 0 | 0 | 814 | 816 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 184 | 0 | 0 | 0 | 985 | 985 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 185 | 0 | 11 | 0 | 810 | 821 | 0.00 | 0.01 | 0.00 | 0.99 | C | 58 | 0.99 |
| 186 | 0 | 723 | 0 | 57 | 780 | 0.00 | 0.93 | 0.00 | 0.07 | T | 58 | 0.93 |
| 187 | 0 | 19 | 0 | 898 | 917 | 0.00 | 0.02 | 0.00 | 0.98 | C | 58 | 0.98 |
| 188 | 6 | 545 | 0 | 2 | 553 | 0.01 | 0.99 | 0.00 | 0.00 | T | 34 | 0.99 |
| 189 | 863 | 0 | 0 | 0 | 863 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 190 | 615 | 0 | 0 | 2 | 617 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 191 | 0 | 0 | 0 | 675 | 675 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 192 | 0 | 3 | 0 | 768 | 771 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 193 | 95 | 542 | 0 | 2 | 639 | 0.15 | 0.85 | 0.00 | 0.00 | T | 34 | 0.85 |
| 194 | 846 | 0 | 0 | 0 | 846 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 195 | 610 | 0 | 0 | 0 | 610 | 1.00 | 0.00 | 0.00 | 0.00 | A | 61 | 1.00 |
| 196 | 603 | 0 | 0 | 0 | 603 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 197 | 668 | 9 | 0 | 0 | 677 | 0.99 | 0.01 | 0.00 | 0.00 | A | 58 | 0.99 |
| 198 | 3 | 750 | 0 | 0 | 753 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 199 | 14 | 853 | 0 | 0 | 867 | 0.02 | 0.98 | 0.00 | 0.00 | T | 58 | 0.98 |
| 200 | 819 | 3 | 0 | 2 | 824 | 0.99 | 0.00 | 0.00 | 0.00 | A | 58 | 0.99 |
| 201 | 3 | 3 | 0 | 654 | 660 | 0.00 | 0.00 | 0.00 | 0.99 | C | 58 | 0.99 |
| 202 | 137 | 514 | 0 | 0 | 651 | 0.21 | 0.79 | 0.00 | 0.00 | T | 34 | 0.79 |
| 203 | 877 | 2 | 0 | 0 | 879 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 204 | 620 | 0 | 0 | 0 | 620 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 205 | 467 | 0 | 0 | 100 | 567 | 0.82 | 0.00 | 0.00 | 0.18 | A | 34 | 0.82 |
| 206 | 2 | 0 | 0 | 700 | 702 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 207 | 0 | 0 | 0 | 883 | 883 | 0.00 | 0.00 | 0.00 | 1.00 | C | 58 | 1.00 |
| 208 | 0 | 25 | 0 | 748 | 773 | 0.00 | 0.03 | 0.00 | 0.97 | C | 58 | 0.97 |
| 209 | 0 | 804 | 0 | 0 | 804 | 0.00 | 1.00 | 0.00 | 0.00 | T | 58 | 1.00 |
| 210 | 0 | 1014 | 0 | 0 | 1014 | 0.00 | 1.00 | 0.00 | 0.00 | T | 51 | 1.00 |
| 211 | 186 | 717 | 0 | 0 | 903 | 0.21 | 0.79 | 0.00 | 0.00 | T | 32 | 0.79 |
| 212 | 747 | 2 | 0 | 0 | 749 | 1.00 | 0.00 | 0.00 | 0.00 | A | 58 | 1.00 |
| 213 | 7 | 120 | 536 | 0 | 663 | 0.01 | 0.18 | 0.81 | 0.00 | G | 29 | 0.81 |
| 214 | 0 | 446 | 321 | 0 | 767 | 0.00 | 0.58 | 0.42 | 0.00 | T | 25 | 0.58 |
| 215 | 30 | 0 | 530 | 0 | 560 | 0.05 | 0.00 | 0.95 | 0.00 | G | 41 | 0.95 |
| 216 | 600 | 0 | 292 | 0 | 892 | 0.67 | 0.00 | 0.33 | 0.00 | A | 25 | 0.67 |
| 217 | 1 | 0 | 799 | 0 | 800 | 0.00 | 0.00 | 1.00 | 0.00 | G | 46 | 1.00 |
| 218 | 0 | 0 | 1115 | 0 | 1115 | 0.00 | 0.00 | 1.00 | 0.00 | G | 51 | 1.00 |
| 219 | 0 | 3 | 758 | 0 | 761 | 0.00 | 0.00 | 1.00 | 0.00 | G | 51 | 1.00 |
| 220 | 0 | 620 | 0 | 0 | 620 | 0.00 | 1.00 | 0.00 | 0.00 | T | 50 | 1.00 |
| 221 | 203 | 599 | 0 | 0 | 802 | 0.25 | 0.75 | 0.00 | 0.00 | T | 31 | 0.75 |
| 222 | 896 | 2 | 0 | 0 | 898 | 1.00 | 0.00 | 0.00 | 0.00 | A | 47 | 1.00 |
Sequencing result #1 is aligned on both sense and antisense bisulfite converted DNA sequences to determine the sequencing direction as forward or reverse.
Warning: Trimmed sequence from the sequencing result #1 was found with insufficient length or insufficient quality and will not be used.
Trimmed sequence of primary peaks from sequencing result #1 is aligned with bisulfite converted reference DNA sense sequence
Trimmed sequence of primary peaks from sequencing result #1 is aligned with bisulfite converted reference DNA antisense sequence
Warning: Insufficient quality of trimmed sequence for direction determination.
Sequencing result #2 is aligned on both sense and antisense bisulfite converted DNA sequences to determine the sequencing direction as forward or reverse.
Trimmed sequence of primary peaks from sequencing result #2 is aligned with bisulfite converted reference DNA sense sequence
## ########################################
## # Program: Biostrings (version 2.64.1), a Bioconductor package
## # Rundate: Sat Apr 29 18:12:21 2023
## ########################################
## #=======================================
## #
## # Aligned_sequences: 2
## # 1: P1
## # 2: S1
## # Matrix: NA
## # Gap_penalty: 14.0
## # Extend_penalty: 4.0
## #
## # Length: 8
## # Identity: 8/8 (100.0%)
## # Similarity: NA/8 (NA%)
## # Gaps: 0/8 (0.0%)
## # Score: 15.85405
## #
## #
## #=======================================
##
## P1 40 GAGGGTTA 47
## ||||||||
## S1 87 GAGGGTTA 94
##
##
## #---------------------------------------
## #---------------------------------------
Trimmed sequence of primary peaks from sequencing result #2 is aligned with bisulfite converted reference DNA antisense sequence
## ########################################
## # Program: Biostrings (version 2.64.1), a Bioconductor package
## # Rundate: Sat Apr 29 18:12:21 2023
## ########################################
## #=======================================
## #
## # Aligned_sequences: 2
## # 1: P1
## # 2: S1
## # Matrix: NA
## # Gap_penalty: 14.0
## # Extend_penalty: 4.0
## #
## # Length: 146
## # Identity: 146/146 (100.0%)
## # Similarity: NA/146 (NA%)
## # Gaps: 0/146 (0.0%)
## # Score: 289.336
## #
## #
## #=======================================
##
## P1 51 ACCGCCCCCCGTACCGCTAA 70
## ||||||||||||||||||||
## S1 128 ACCGCCCCCCGTACCGCTAA 147
##
## P1 71 TTAACTAAAAATTCACCTAC 90
## ||||||||||||||||||||
## S1 148 TTAACTAAAAATTCACCTAC 167
##
## P1 91 CGACCACAACCAATCAACAA 110
## ||||||||||||||||||||
## S1 168 CGACCACAACCAATCAACAA 187
##
## P1 111 CGCGAACCCCTCCCCAAAAC 130
## ||||||||||||||||||||
## S1 188 CGCGAACCCCTCCCCAAAAC 207
##
## P1 131 GAAACTAACGACCCGCCCAC 150
## ||||||||||||||||||||
## S1 208 GAAACTAACGACCCGCCCAC 227
##
## P1 151 CCGACCTCGCATAAACGCGA 170
## ||||||||||||||||||||
## S1 228 CCGACCTCGCATAAACGCGA 247
##
## P1 171 TAACCCTCTAACCTAAAATT 190
## ||||||||||||||||||||
## S1 248 TAACCCTCTAACCTAAAATT 267
##
## P1 191 ACTAAA 196
## ||||||
## S1 268 ACTAAA 273
##
##
## #---------------------------------------
## #---------------------------------------
Sequencing result #2 corresponds to reverse direction
No sequencing file provided for forward sequencing result.
To find nucleotides of reference DNA sequence positions on sequencing result, the trimmed sequence of primary peaks from forward sequencing results is aligned with bisulfite converted reference DNA sense sequence.
To find nucleotides of reference DNA sequence positions on sequencing result, the trimmed sequence of primary peaks from reverse sequencing results is aligned with bisulfite converted reference DNA antisense sequence.
## ########################################
## # Program: Biostrings (version 2.64.1), a Bioconductor package
## # Rundate: Sat Apr 29 18:12:22 2023
## ########################################
## #=======================================
## #
## # Aligned_sequences: 2
## # 1: P1
## # 2: S1
## # Matrix: NA
## # Gap_penalty: 14.0
## # Extend_penalty: 4.0
## #
## # Length: 146
## # Identity: 146/146 (100.0%)
## # Similarity: NA/146 (NA%)
## # Gaps: 0/146 (0.0%)
## # Score: 289.336
## #
## #
## #=======================================
##
## P1 51 ACCGCCCCCCGTACCGCTAA 70
## ||||||||||||||||||||
## S1 128 ACCGCCCCCCGTACCGCTAA 147
##
## P1 71 TTAACTAAAAATTCACCTAC 90
## ||||||||||||||||||||
## S1 148 TTAACTAAAAATTCACCTAC 167
##
## P1 91 CGACCACAACCAATCAACAA 110
## ||||||||||||||||||||
## S1 168 CGACCACAACCAATCAACAA 187
##
## P1 111 CGCGAACCCCTCCCCAAAAC 130
## ||||||||||||||||||||
## S1 188 CGCGAACCCCTCCCCAAAAC 207
##
## P1 131 GAAACTAACGACCCGCCCAC 150
## ||||||||||||||||||||
## S1 208 GAAACTAACGACCCGCCCAC 227
##
## P1 151 CCGACCTCGCATAAACGCGA 170
## ||||||||||||||||||||
## S1 228 CCGACCTCGCATAAACGCGA 247
##
## P1 171 TAACCCTCTAACCTAAAATT 190
## ||||||||||||||||||||
## S1 248 TAACCCTCTAACCTAAAATT 267
##
## P1 191 ACTAAA 196
## ||||||
## S1 268 ACTAAA 273
##
##
## #---------------------------------------
## #---------------------------------------
Aligned sequence from reverse sequencing result (Pattern P1):
Length: 146 bp
## ACCGCCCCCCGTACCGCTAATTAACTAAAAATTCACCTACCGACCACAACCAATCAACAACGCGAACCCCTCCCCAAAACGAAACTAACGACCCGCCCACCCGACCTCGCATAAACGCGATAACCCTCTAACCTAAAATTACTAAA
Aligned sequence from bisulfite converted reference DNA antisense sequence (Subject S1):
Length: 146 bp
## ACCGCCCCCCGTACCGCTAATTAACTAAAAATTCACCTACCGACCACAACCAATCAACAACGCGAACCCCTCCCCAAAACGAAACTAACGACCCGCCCACCCGACCTCGCATAAACGCGATAACCCTCTAACCTAAAATTACTAAA
| Thresholds | Values |
|---|---|
| Minimum length of the aligned sequence : | 30 bp |
| Minimum identity percentage of alignment : | 75 % |
| Minimum of bisulfite conversion rate mean : | 0.9 |
| Direction | Sequencing | Length | Identity | Mismatch | Indel in DNA reference | Indel in sequencing | Mean of conversion rates | SD of conversion rates | Quality Result |
|---|---|---|---|---|---|---|---|---|---|
| Reverse | #2 | 146 | 100 | 0 | 0 | 0 | 1 | 0 | Correct |
No sequencing file provided for forward sequencing result.
No mismatch positions in reverse alignment.
No insertions/deletions in reverse alignment.
| C number | Bisulfite conversion rate Reverse |
|---|---|
| 50 | 1.00 |
| 49 | 1.00 |
| 48 | 1.00 |
| 47 | 1.00 |
| 46 | 1.00 |
| 45 | 1.00 |
| 44 | 1.00 |
| 43 | 1.00 |
| 42 | 1.00 |
| 41 | 1.00 |
| 40 | 1.00 |
| 39 | 1.00 |
| 38 | 1.00 |
| 37 | 1.00 |
| 36 | 1.00 |
| 35 | 1.00 |
| 34 | 1.00 |
| 33 | 1.00 |
| 32 | 1.00 |
| 31 | 1.00 |
| 30 | 1.00 |
| 29 | 1.00 |
| 28 | 1.00 |
| 27 | 1.00 |
| 26 | 1.00 |
| 25 | 1.00 |
| 24 | 1.00 |
| 23 | 1.00 |
| 22 | 1.00 |
| 21 | 1.00 |
| 20 | 1.00 |
| C number | Position in reference DNA | Position in sequencing result (trimmed) | Position in sequencing result (raw) | A peak | T peak | G peak | C peak | Bisulfite conversion rate |
|---|---|---|---|---|---|---|---|---|
| 50 | 146 | 69 | 78 | 609 | 0 | 0 | 0 | 1 |
| 49 | 150 | 73 | 82 | 747 | 1 | 0 | 0 | 1 |
| 48 | 151 | 74 | 83 | 508 | 0 | 0 | 0 | 1 |
| 47 | 154 | 77 | 86 | 745 | 1 | 0 | 0 | 1 |
| 46 | 156 | 79 | 88 | 560 | 0 | 0 | 0 | 1 |
| 45 | 157 | 80 | 89 | 369 | 0 | 0 | 0 | 1 |
| 44 | 158 | 81 | 90 | 610 | 0 | 0 | 0 | 1 |
| 43 | 166 | 89 | 98 | 816 | 1 | 0 | 2 | 1 |
| 42 | 170 | 93 | 102 | 959 | 0 | 2 | 0 | 1 |
| 41 | 176 | 99 | 108 | 541 | 0 | 0 | 2 | 1 |
| 40 | 184 | 107 | 116 | 502 | 0 | 0 | 2 | 1 |
| 39 | 187 | 110 | 119 | 526 | 0 | 0 | 2 | 1 |
| 38 | 192 | 115 | 124 | 731 | 0 | 1 | 0 | 1 |
| 37 | 204 | 127 | 136 | 618 | 0 | 0 | 0 | 1 |
| 36 | 205 | 128 | 137 | 758 | 0 | 0 | 0 | 1 |
| 35 | 206 | 129 | 138 | 716 | 0 | 0 | 0 | 1 |
| 34 | 209 | 132 | 141 | 712 | 0 | 0 | 0 | 1 |
| 33 | 211 | 134 | 143 | 595 | 0 | 0 | 2 | 1 |
| 32 | 214 | 137 | 146 | 856 | 2 | 0 | 0 | 1 |
| 31 | 218 | 141 | 150 | 795 | 0 | 2 | 7 | 1 |
| 30 | 231 | 154 | 163 | 1078 | 0 | 0 | 3 | 1 |
| 29 | 241 | 164 | 173 | 679 | 0 | 0 | 0 | 1 |
| 28 | 247 | 170 | 179 | 748 | 2 | 2 | 0 | 1 |
| 27 | 249 | 172 | 181 | 824 | 0 | 0 | 0 | 1 |
| 26 | 258 | 181 | 190 | 615 | 0 | 0 | 2 | 1 |
| 25 | 262 | 185 | 194 | 846 | 0 | 0 | 0 | 1 |
| 24 | 263 | 186 | 195 | 610 | 0 | 0 | 0 | 1 |
| 23 | 265 | 188 | 197 | 668 | 9 | 0 | 0 | 1 |
| 22 | 268 | 191 | 200 | 819 | 3 | 0 | 2 | 1 |
| 21 | 272 | 195 | 204 | 620 | 0 | 0 | 0 | 1 |
| 20 | 273 | 196 | 205 | 467 | 0 | 0 | 100 | 1 |
The maximum aligned sequence corresponds to the maximum sequence covered by at least one correct sequencing.
Length of max aligned sequence : 146 bp
Coordinates of max aligned sequence :
chr16:68771008-68771153
Maximum aligned sequence (on bisulfite converted sense sequence from the plus strand sequence) :
## TTTAGTAATTTTAGGTTAGAGGGTTATCGCGTTTATGCGAGGTCGGGTGGGCGGGTCGTTAGTTTCGTTTTGGGGAGGGGTTCGCGTTGTTGATTGGTTGTGGTCGGTAGGTGAATTTTTAGTTAATTAGCGGTACGGGGGGCGGT
| CG number | Chromosome | Start | End | Methylation Percentage Forward | Methylation Percentage Reverse | Methylation Percentage Average | Methylation Percentage SD |
|---|---|---|---|---|---|---|---|
| 17 | chr16 | 68771150 | 68771151 | NA | 100.00 | 100.00 | NA |
| 16 | chr16 | 68771143 | 68771144 | NA | 100.00 | 100.00 | NA |
| 15 | chr16 | 68771138 | 68771139 | NA | 100.00 | 100.00 | NA |
| 14 | chr16 | 68771112 | 68771113 | NA | 99.63 | 99.63 | NA |
| 13 | chr16 | 68771092 | 68771093 | NA | 100.00 | 100.00 | NA |
| 12 | chr16 | 68771090 | 68771091 | NA | 97.52 | 97.52 | NA |
| 11 | chr16 | 68771073 | 68771074 | NA | 77.22 | 77.22 | NA |
| 10 | chr16 | 68771064 | 68771065 | NA | 95.72 | 95.72 | NA |
| 9 | chr16 | 68771059 | 68771060 | NA | 100.00 | 100.00 | NA |
| 8 | chr16 | 68771051 | 68771052 | NA | 83.35 | 83.35 | NA |
| 7 | chr16 | 68771045 | 68771046 | NA | 100.00 | 100.00 | NA |
| 6 | chr16 | 68771037 | 68771038 | NA | 100.00 | 100.00 | NA |
| 5 | chr16 | 68771035 | 68771036 | NA | 81.43 | 81.43 | NA |
No sequencing file provided for forward sequencing result.
| CG number | Chromosome | Start | End | G position in reference DNA | G position in sequencing result (trimmed) | G position in sequencing result (raw) | A peak | T peak | G peak | C peak | Methylation Percentage |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 17 | chr16 | 68771150 | 68771151 | 131 | 54 | 63 | 0 | 0 | 627 | 12 | 100.00 |
| 16 | chr16 | 68771143 | 68771144 | 138 | 61 | 70 | 0 | 0 | 736 | 0 | 100.00 |
| 15 | chr16 | 68771138 | 68771139 | 143 | 66 | 75 | 0 | 0 | 820 | 25 | 100.00 |
| 14 | chr16 | 68771112 | 68771113 | 169 | 92 | 101 | 3 | 0 | 807 | 3 | 99.63 |
| 13 | chr16 | 68771092 | 68771093 | 189 | 112 | 121 | 0 | 0 | 658 | 13 | 100.00 |
| 12 | chr16 | 68771090 | 68771091 | 191 | 114 | 123 | 8 | 0 | 315 | 0 | 97.52 |
| 11 | chr16 | 68771073 | 68771074 | 208 | 131 | 140 | 154 | 0 | 522 | 0 | 77.22 |
| 10 | chr16 | 68771064 | 68771065 | 217 | 140 | 149 | 31 | 0 | 694 | 2 | 95.72 |
| 9 | chr16 | 68771059 | 68771060 | 222 | 145 | 154 | 0 | 0 | 740 | 30 | 100.00 |
| 8 | chr16 | 68771051 | 68771052 | 230 | 153 | 162 | 136 | 0 | 681 | 3 | 83.35 |
| 7 | chr16 | 68771045 | 68771046 | 236 | 159 | 168 | 0 | 0 | 498 | 37 | 100.00 |
| 6 | chr16 | 68771037 | 68771038 | 244 | 167 | 176 | 0 | 0 | 588 | 30 | 100.00 |
| 5 | chr16 | 68771035 | 68771036 | 246 | 169 | 178 | 127 | 0 | 557 | 0 | 81.43 |
CDH1_High methylated DNA_1_aligned_DNAref_R.fasta
CDH1_High methylated DNA_1_aligned_max_seq.fasta
CDH1_High methylated DNA_1_chromatogram_1.pdf
CDH1_High methylated DNA_1_bisconv_table.csv
CDH1_High methylated DNA_1_bisconv_table.png
CDH1_High methylated DNA_1_bisconv_table.xlsx
CDH1_High methylated DNA_1_meth_table.csv
CDH1_High methylated DNA_1_meth_table.png
CDH1_High methylated DNA_1_meth_table.xlsx
CDH1_High methylated DNA_1_QC.png
CDH1_High methylated DNA_1_QC_table.csv
CDH1_High methylated DNA_1_QC_table.xlsx
CDH1_High methylated DNA_1_seqtable_1.csv
CDH1_High methylated DNA_1_seqtable_1.xlsx
CDH1_High methylated DNA_1_seqtable_2.csv
CDH1_High methylated DNA_1_seqtable_2.xlsx
CDH1_High methylated DNA_1_seqtable_trimmed_2.csv
CDH1_High methylated DNA_1_seqtable_trimmed_2.xlsx
CDH1_High methylated DNA_1_trimmedseq.png
| CG_nb | chromosome | start | end | meth_F | meth_R | meth_avg | meth_sd | collection | group | rep | clone | alg_coord_start | alg_coord_end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17 | chr16 | 68771150 | 68771151 | NA | 100.00 | 100.00 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 | |
| 16 | chr16 | 68771143 | 68771144 | NA | 100.00 | 100.00 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 | |
| 15 | chr16 | 68771138 | 68771139 | NA | 100.00 | 100.00 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 | |
| 14 | chr16 | 68771112 | 68771113 | NA | 99.63 | 99.63 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 | |
| 13 | chr16 | 68771092 | 68771093 | NA | 100.00 | 100.00 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 | |
| 12 | chr16 | 68771090 | 68771091 | NA | 97.52 | 97.52 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 | |
| 11 | chr16 | 68771073 | 68771074 | NA | 77.22 | 77.22 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 | |
| 10 | chr16 | 68771064 | 68771065 | NA | 95.72 | 95.72 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 | |
| 9 | chr16 | 68771059 | 68771060 | NA | 100.00 | 100.00 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 | |
| 8 | chr16 | 68771051 | 68771052 | NA | 83.35 | 83.35 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 | |
| 7 | chr16 | 68771045 | 68771046 | NA | 100.00 | 100.00 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 | |
| 6 | chr16 | 68771037 | 68771038 | NA | 100.00 | 100.00 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 | |
| 5 | chr16 | 68771035 | 68771036 | NA | 81.43 | 81.43 | NA | High methylated DNA | 1 | NA | 68771008 | 68771153 |